Hb_000245_040

Information

Type -
Description -
Location Contig245: 19855-27783
Sequence    

Annotation

kegg
ID vvi:100253221
description uncharacterized LOC100253221
nr
ID XP_012069094.1
description PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
swissprot
ID P40234
description Casein kinase I homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cki2 PE=1 SV=2
trembl
ID A0A067L0W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24867 PE=3 SV=1
Gene Ontology
ID GO:0004674
description casein kinase i-2-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25538: 19844-27694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_040 0.0 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
2 Hb_000107_490 0.052917905 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
3 Hb_000297_010 0.0547888525 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
4 Hb_000866_170 0.0569570397 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_004724_150 0.0586311076 - - expressed protein, putative [Ricinus communis]
6 Hb_006938_080 0.069308409 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
7 Hb_000890_210 0.0703465604 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
8 Hb_001341_170 0.0713179135 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
9 Hb_002942_100 0.0736834004 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
10 Hb_007441_220 0.0737727095 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
11 Hb_001217_050 0.0751195458 - - actin binding protein, putative [Ricinus communis]
12 Hb_000041_110 0.0753129967 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
13 Hb_002903_060 0.0766377259 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
14 Hb_015934_040 0.0791157587 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
15 Hb_000041_100 0.079325166 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
16 Hb_172632_110 0.0822230041 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
17 Hb_000028_280 0.0822943664 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
18 Hb_000185_040 0.0831436902 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
19 Hb_001799_180 0.0835563207 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
20 Hb_000003_590 0.083823011 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000245_040 Hb_000245_040 Hb_000107_490 Hb_000107_490 Hb_000245_040--Hb_000107_490 Hb_000297_010 Hb_000297_010 Hb_000245_040--Hb_000297_010 Hb_000866_170 Hb_000866_170 Hb_000245_040--Hb_000866_170 Hb_004724_150 Hb_004724_150 Hb_000245_040--Hb_004724_150 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080 Hb_000890_210 Hb_000890_210 Hb_000245_040--Hb_000890_210 Hb_000107_490--Hb_000890_210 Hb_000111_290 Hb_000111_290 Hb_000107_490--Hb_000111_290 Hb_010174_110 Hb_010174_110 Hb_000107_490--Hb_010174_110 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030 Hb_000107_490--Hb_004724_150 Hb_000185_030 Hb_000185_030 Hb_000297_010--Hb_000185_030 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250 Hb_000866_170--Hb_000297_010 Hb_000395_190 Hb_000395_190 Hb_000866_170--Hb_000395_190 Hb_000866_170--Hb_000890_210 Hb_000866_170--Hb_004724_150 Hb_001341_170 Hb_001341_170 Hb_000866_170--Hb_001341_170 Hb_004724_150--Hb_001341_170 Hb_000028_180 Hb_000028_180 Hb_004724_150--Hb_000028_180 Hb_000556_160 Hb_000556_160 Hb_004724_150--Hb_000556_160 Hb_002809_050 Hb_002809_050 Hb_006938_080--Hb_002809_050 Hb_000646_050 Hb_000646_050 Hb_006938_080--Hb_000646_050 Hb_006938_080--Hb_000866_170 Hb_006938_080--Hb_000107_490 Hb_006938_080--Hb_000395_190 Hb_000890_210--Hb_001341_170 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.63393 18.7219 6.92651 13.7115 13.79 15.1591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2273 13.186 23.0506 17.21 12.4438

CAGE analysis