Hb_000245_090

Information

Type -
Description -
Location Contig245: 101957-102511
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18920g
description POPTRDRAFT_171763; hypothetical protein
nr
ID XP_012069099.1
description PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24871 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_090 0.0 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
2 Hb_008725_280 0.0283771814 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
3 Hb_002161_010 0.0339957217 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
4 Hb_004611_010 0.0382026982 - - Blue copper protein precursor, putative [Ricinus communis]
5 Hb_000003_530 0.0414763754 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
6 Hb_001038_020 0.0479280599 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
7 Hb_004116_030 0.0505632714 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
8 Hb_000762_050 0.0561955758 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
9 Hb_027403_010 0.0565203767 - - P66 protein [Hevea brasiliensis]
10 Hb_016334_010 0.0588670413 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
11 Hb_007559_020 0.0595432288 - - peptidylprolyl isomerase, putative [Ricinus communis]
12 Hb_003436_040 0.0660159341 - - monovalent cation:proton antiporter, putative [Ricinus communis]
13 Hb_097940_010 0.0661323842 - - pollen protein Ole E I-like protein [Medicago truncatula]
14 Hb_009663_030 0.0693383685 - - Blue copper protein precursor, putative [Ricinus communis]
15 Hb_032631_060 0.0694942632 - - Myosin heavy chain, putative [Ricinus communis]
16 Hb_000139_010 0.0699296004 - - -
17 Hb_001104_080 0.0722768663 - - peroxiredoxin, putative [Ricinus communis]
18 Hb_003653_030 0.0750723846 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_001038_040 0.075376221 - - -
20 Hb_000825_010 0.0763819671 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_000245_090 Hb_000245_090 Hb_008725_280 Hb_008725_280 Hb_000245_090--Hb_008725_280 Hb_002161_010 Hb_002161_010 Hb_000245_090--Hb_002161_010 Hb_004611_010 Hb_004611_010 Hb_000245_090--Hb_004611_010 Hb_000003_530 Hb_000003_530 Hb_000245_090--Hb_000003_530 Hb_001038_020 Hb_001038_020 Hb_000245_090--Hb_001038_020 Hb_004116_030 Hb_004116_030 Hb_000245_090--Hb_004116_030 Hb_008725_280--Hb_002161_010 Hb_008725_280--Hb_000003_530 Hb_008725_280--Hb_004611_010 Hb_008725_280--Hb_001038_020 Hb_008725_280--Hb_004116_030 Hb_002161_010--Hb_000003_530 Hb_000762_050 Hb_000762_050 Hb_002161_010--Hb_000762_050 Hb_002161_010--Hb_004611_010 Hb_002161_010--Hb_001038_020 Hb_027403_010 Hb_027403_010 Hb_004611_010--Hb_027403_010 Hb_003436_040 Hb_003436_040 Hb_004611_010--Hb_003436_040 Hb_004611_010--Hb_001038_020 Hb_000003_530--Hb_000762_050 Hb_000003_530--Hb_004116_030 Hb_016334_010 Hb_016334_010 Hb_000003_530--Hb_016334_010 Hb_001038_020--Hb_000003_530 Hb_001038_020--Hb_000762_050 Hb_004116_030--Hb_000762_050 Hb_004116_030--Hb_016334_010 Hb_004116_030--Hb_002161_010 Hb_003653_030 Hb_003653_030 Hb_004116_030--Hb_003653_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 6.64482 1.22898 0.0491393 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 23.5326

CAGE analysis