Hb_000245_100

Information

Type -
Description -
Location Contig245: 107184-108882
Sequence    

Annotation

kegg
ID rcu:RCOM_1491190
description hypothetical protein
nr
ID XP_012069100.1
description PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24873 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25542: 109501-109713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_100 0.0 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
2 Hb_005329_030 0.1168852098 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
3 Hb_037684_010 0.1184332516 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
4 Hb_003858_060 0.1189827812 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
5 Hb_006355_070 0.1197988101 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
6 Hb_004204_220 0.1254939393 - - -
7 Hb_009222_080 0.1268707866 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
8 Hb_004307_070 0.1273514601 - - kinase, putative [Ricinus communis]
9 Hb_006916_140 0.1275971257 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
10 Hb_000834_100 0.1301597012 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
11 Hb_000956_100 0.1312329731 - - Cucumisin precursor, putative [Ricinus communis]
12 Hb_001221_470 0.1312946162 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
13 Hb_001143_140 0.1330690166 - - Aldehyde dehydrogenase, putative [Ricinus communis]
14 Hb_027892_050 0.133203198 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
15 Hb_060198_010 0.1372890932 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_002010_070 0.1373805285 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
17 Hb_000899_060 0.1375054166 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
18 Hb_002374_520 0.1377178451 - - early nodulin 8 precursor family protein [Populus trichocarpa]
19 Hb_014361_040 0.1404376478 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
20 Hb_000023_180 0.1448960065 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000245_100 Hb_000245_100 Hb_005329_030 Hb_005329_030 Hb_000245_100--Hb_005329_030 Hb_037684_010 Hb_037684_010 Hb_000245_100--Hb_037684_010 Hb_003858_060 Hb_003858_060 Hb_000245_100--Hb_003858_060 Hb_006355_070 Hb_006355_070 Hb_000245_100--Hb_006355_070 Hb_004204_220 Hb_004204_220 Hb_000245_100--Hb_004204_220 Hb_009222_080 Hb_009222_080 Hb_000245_100--Hb_009222_080 Hb_000023_180 Hb_000023_180 Hb_005329_030--Hb_000023_180 Hb_006916_140 Hb_006916_140 Hb_005329_030--Hb_006916_140 Hb_004374_030 Hb_004374_030 Hb_005329_030--Hb_004374_030 Hb_000963_120 Hb_000963_120 Hb_005329_030--Hb_000963_120 Hb_005329_030--Hb_004204_220 Hb_000000_290 Hb_000000_290 Hb_005329_030--Hb_000000_290 Hb_000899_060 Hb_000899_060 Hb_037684_010--Hb_000899_060 Hb_002374_520 Hb_002374_520 Hb_037684_010--Hb_002374_520 Hb_020817_030 Hb_020817_030 Hb_037684_010--Hb_020817_030 Hb_002053_170 Hb_002053_170 Hb_037684_010--Hb_002053_170 Hb_002598_020 Hb_002598_020 Hb_037684_010--Hb_002598_020 Hb_003858_060--Hb_004204_220 Hb_000834_100 Hb_000834_100 Hb_003858_060--Hb_000834_100 Hb_002876_280 Hb_002876_280 Hb_003858_060--Hb_002876_280 Hb_000856_210 Hb_000856_210 Hb_003858_060--Hb_000856_210 Hb_094437_020 Hb_094437_020 Hb_003858_060--Hb_094437_020 Hb_001629_050 Hb_001629_050 Hb_003858_060--Hb_001629_050 Hb_038833_010 Hb_038833_010 Hb_006355_070--Hb_038833_010 Hb_004307_070 Hb_004307_070 Hb_006355_070--Hb_004307_070 Hb_006355_070--Hb_003858_060 Hb_006355_070--Hb_002876_280 Hb_006355_070--Hb_001629_050 Hb_004204_220--Hb_001629_050 Hb_011161_090 Hb_011161_090 Hb_004204_220--Hb_011161_090 Hb_002095_020 Hb_002095_020 Hb_004204_220--Hb_002095_020 Hb_004204_220--Hb_000834_100 Hb_002902_070 Hb_002902_070 Hb_004204_220--Hb_002902_070 Hb_002685_220 Hb_002685_220 Hb_009222_080--Hb_002685_220 Hb_009222_080--Hb_006916_140 Hb_005725_160 Hb_005725_160 Hb_009222_080--Hb_005725_160 Hb_010968_030 Hb_010968_030 Hb_009222_080--Hb_010968_030 Hb_009222_080--Hb_005329_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0660538 17.9377 4.33177 32.7094 0.041275 0.0922753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0504249 0.118978 0 12.0402 27.3496

CAGE analysis