Hb_000245_110

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig245: 112938-114029
Sequence    

Annotation

kegg
ID rcu:RCOM_1491210
description GATA transcription factor, putative
nr
ID XP_012069102.1
description PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
swissprot
ID O82632
description GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1
trembl
ID A0A067KXE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24875 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gata transcription factor 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25543: 113047-113536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_110 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
2 Hb_000012_380 0.0684629999 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
3 Hb_003090_190 0.0746522355 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
4 Hb_042083_010 0.0763286796 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
5 Hb_000328_030 0.0794552001 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
6 Hb_026124_020 0.0795865665 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
7 Hb_005614_020 0.0807922644 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
8 Hb_015807_090 0.0860937342 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
9 Hb_001377_230 0.0866799517 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
10 Hb_148262_010 0.0872727682 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000165_260 0.0929361795 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
12 Hb_000086_490 0.0982927222 - - cellulose synthase [Populus tomentosa]
13 Hb_001279_400 0.10046301 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
14 Hb_008001_030 0.1005077158 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
15 Hb_002835_070 0.1020113621 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003747_160 0.1026980278 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001709_080 0.1032804053 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_001511_220 0.1036322411 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
19 Hb_001366_300 0.1037957733 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
20 Hb_002171_050 0.1058968629 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]

Gene co-expression network

sample Hb_000245_110 Hb_000245_110 Hb_000012_380 Hb_000012_380 Hb_000245_110--Hb_000012_380 Hb_003090_190 Hb_003090_190 Hb_000245_110--Hb_003090_190 Hb_042083_010 Hb_042083_010 Hb_000245_110--Hb_042083_010 Hb_000328_030 Hb_000328_030 Hb_000245_110--Hb_000328_030 Hb_026124_020 Hb_026124_020 Hb_000245_110--Hb_026124_020 Hb_005614_020 Hb_005614_020 Hb_000245_110--Hb_005614_020 Hb_000012_380--Hb_026124_020 Hb_148262_010 Hb_148262_010 Hb_000012_380--Hb_148262_010 Hb_000012_380--Hb_003090_190 Hb_000012_380--Hb_042083_010 Hb_000012_380--Hb_000328_030 Hb_000165_260 Hb_000165_260 Hb_003090_190--Hb_000165_260 Hb_003090_190--Hb_000328_030 Hb_000311_100 Hb_000311_100 Hb_003090_190--Hb_000311_100 Hb_015807_090 Hb_015807_090 Hb_003090_190--Hb_015807_090 Hb_042083_010--Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_042083_010--Hb_000086_490 Hb_042083_010--Hb_000328_030 Hb_006065_030 Hb_006065_030 Hb_042083_010--Hb_006065_030 Hb_005523_030 Hb_005523_030 Hb_042083_010--Hb_005523_030 Hb_012633_020 Hb_012633_020 Hb_042083_010--Hb_012633_020 Hb_000328_030--Hb_000086_490 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_000328_030--Hb_000165_260 Hb_000328_030--Hb_005523_030 Hb_000328_030--Hb_015807_090 Hb_026124_020--Hb_148262_010 Hb_001401_120 Hb_001401_120 Hb_026124_020--Hb_001401_120 Hb_001366_300 Hb_001366_300 Hb_026124_020--Hb_001366_300 Hb_077774_010 Hb_077774_010 Hb_026124_020--Hb_077774_010 Hb_003747_160 Hb_003747_160 Hb_005614_020--Hb_003747_160 Hb_002499_030 Hb_002499_030 Hb_005614_020--Hb_002499_030 Hb_011224_070 Hb_011224_070 Hb_005614_020--Hb_011224_070 Hb_005614_020--Hb_015807_090 Hb_004225_120 Hb_004225_120 Hb_005614_020--Hb_004225_120 Hb_005614_020--Hb_042083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07909 0.615011 7.1919 0.0441317 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0989305 4.85438

CAGE analysis