Hb_000245_130

Information

Type -
Description -
Location Contig245: 122224-124325
Sequence    

Annotation

kegg
ID rcu:RCOM_1491250
description Nucleoporin NUP53, putative
nr
ID XP_012069105.1
description PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
swissprot
ID O04326
description Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana GN=NUP35 PE=1 SV=1
trembl
ID A0A067L0W8
description Nuclear pore complex protein NUP35 OS=Jatropha curcas GN=JCGZ_24877 PE=3 SV=1
Gene Ontology
ID GO:0005643
description nucleoporin nup53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_130 0.0 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
2 Hb_000032_290 0.0592615043 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
3 Hb_004128_190 0.0636196628 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
4 Hb_003847_080 0.0670918783 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
5 Hb_005333_070 0.0742248341 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002374_160 0.0744560249 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
7 Hb_002078_150 0.0764501218 - - protein with unknown function [Ricinus communis]
8 Hb_000321_070 0.0766360441 - - protein with unknown function [Ricinus communis]
9 Hb_002659_070 0.0771547988 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
10 Hb_000398_180 0.0805299407 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
11 Hb_028872_140 0.0813120733 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
12 Hb_001366_190 0.0815627207 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
13 Hb_012305_050 0.0816859376 - - unnamed protein product [Coffea canephora]
14 Hb_006332_010 0.0827253141 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
15 Hb_000802_080 0.082842967 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
16 Hb_006332_020 0.0840479982 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
17 Hb_002811_360 0.0842393769 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
18 Hb_000510_130 0.0855652288 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
19 Hb_148644_010 0.0857884243 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_012008_020 0.0860725342 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000245_130 Hb_000245_130 Hb_000032_290 Hb_000032_290 Hb_000245_130--Hb_000032_290 Hb_004128_190 Hb_004128_190 Hb_000245_130--Hb_004128_190 Hb_003847_080 Hb_003847_080 Hb_000245_130--Hb_003847_080 Hb_005333_070 Hb_005333_070 Hb_000245_130--Hb_005333_070 Hb_002374_160 Hb_002374_160 Hb_000245_130--Hb_002374_160 Hb_002078_150 Hb_002078_150 Hb_000245_130--Hb_002078_150 Hb_000406_220 Hb_000406_220 Hb_000032_290--Hb_000406_220 Hb_018838_030 Hb_018838_030 Hb_000032_290--Hb_018838_030 Hb_181235_010 Hb_181235_010 Hb_000032_290--Hb_181235_010 Hb_000554_020 Hb_000554_020 Hb_000032_290--Hb_000554_020 Hb_006332_020 Hb_006332_020 Hb_000032_290--Hb_006332_020 Hb_004128_190--Hb_002078_150 Hb_004128_190--Hb_003847_080 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_012305_050 Hb_012305_050 Hb_004128_190--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_003847_080--Hb_012305_050 Hb_185830_020 Hb_185830_020 Hb_003847_080--Hb_185830_020 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_003847_080--Hb_002078_150 Hb_000363_500 Hb_000363_500 Hb_003847_080--Hb_000363_500 Hb_001358_030 Hb_001358_030 Hb_005333_070--Hb_001358_030 Hb_007590_010 Hb_007590_010 Hb_005333_070--Hb_007590_010 Hb_003929_250 Hb_003929_250 Hb_005333_070--Hb_003929_250 Hb_012008_020 Hb_012008_020 Hb_005333_070--Hb_012008_020 Hb_001226_160 Hb_001226_160 Hb_005333_070--Hb_001226_160 Hb_002374_160--Hb_004128_190 Hb_000398_180 Hb_000398_180 Hb_002374_160--Hb_000398_180 Hb_001454_140 Hb_001454_140 Hb_002374_160--Hb_001454_140 Hb_000720_120 Hb_000720_120 Hb_002374_160--Hb_000720_120 Hb_002232_170 Hb_002232_170 Hb_002374_160--Hb_002232_170 Hb_000103_560 Hb_000103_560 Hb_002078_150--Hb_000103_560 Hb_002078_150--Hb_000398_180 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.34027 5.40667 1.68303 5.54034 7.67494 13.5589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.18734 11.2226 7.68535 5.63832 3.07134

CAGE analysis