Hb_000245_160

Information

Type -
Description -
Location Contig245: 139509-140438
Sequence    

Annotation

kegg
ID rcu:RCOM_1491280
description Mavicyanin, putative
nr
ID XP_012069268.1
description PREDICTED: mavicyanin [Jatropha curcas]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID B9RQG9
description Mavicyanin, putative OS=Ricinus communis GN=RCOM_1491280 PE=4 SV=1
Gene Ontology
ID GO:0009055
description plastocyanin-like domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25544: 132053-138709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_160 0.0 - - PREDICTED: mavicyanin [Jatropha curcas]
2 Hb_000139_120 0.2332783604 - - sugar transporter, putative [Ricinus communis]
3 Hb_001442_030 0.2512628274 - - Peroxisome biogenesis factor [Medicago truncatula]
4 Hb_162040_010 0.255915958 - - -
5 Hb_124961_010 0.2581892604 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
6 Hb_070469_010 0.2601864115 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
7 Hb_005883_040 0.2620820342 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
8 Hb_017387_030 0.262995527 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_073973_030 0.265933959 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
10 Hb_057247_010 0.2742444 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
11 Hb_121467_010 0.2749903192 - - tubulin-specific chaperone E, putative [Ricinus communis]
12 Hb_170532_010 0.2783080265 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
13 Hb_001005_150 0.279240293 - - -
14 Hb_004668_110 0.2802736041 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007136_020 0.2822073131 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
16 Hb_001427_020 0.2825279152 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
17 Hb_004994_340 0.2827076632 - - -
18 Hb_003297_020 0.2854981443 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_134956_010 0.2870684043 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
20 Hb_000160_150 0.2870878483 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]

Gene co-expression network

sample Hb_000245_160 Hb_000245_160 Hb_000139_120 Hb_000139_120 Hb_000245_160--Hb_000139_120 Hb_001442_030 Hb_001442_030 Hb_000245_160--Hb_001442_030 Hb_162040_010 Hb_162040_010 Hb_000245_160--Hb_162040_010 Hb_124961_010 Hb_124961_010 Hb_000245_160--Hb_124961_010 Hb_070469_010 Hb_070469_010 Hb_000245_160--Hb_070469_010 Hb_005883_040 Hb_005883_040 Hb_000245_160--Hb_005883_040 Hb_017387_030 Hb_017387_030 Hb_000139_120--Hb_017387_030 Hb_005618_060 Hb_005618_060 Hb_000139_120--Hb_005618_060 Hb_000424_090 Hb_000424_090 Hb_000139_120--Hb_000424_090 Hb_027402_030 Hb_027402_030 Hb_000139_120--Hb_027402_030 Hb_010931_060 Hb_010931_060 Hb_000139_120--Hb_010931_060 Hb_002320_070 Hb_002320_070 Hb_001442_030--Hb_002320_070 Hb_126295_010 Hb_126295_010 Hb_001442_030--Hb_126295_010 Hb_007137_060 Hb_007137_060 Hb_001442_030--Hb_007137_060 Hb_076874_010 Hb_076874_010 Hb_001442_030--Hb_076874_010 Hb_073973_160 Hb_073973_160 Hb_001442_030--Hb_073973_160 Hb_058551_010 Hb_058551_010 Hb_001442_030--Hb_058551_010 Hb_007951_040 Hb_007951_040 Hb_162040_010--Hb_007951_040 Hb_001025_110 Hb_001025_110 Hb_162040_010--Hb_001025_110 Hb_001454_380 Hb_001454_380 Hb_162040_010--Hb_001454_380 Hb_000959_250 Hb_000959_250 Hb_162040_010--Hb_000959_250 Hb_162040_010--Hb_070469_010 Hb_003050_370 Hb_003050_370 Hb_162040_010--Hb_003050_370 Hb_170532_010 Hb_170532_010 Hb_124961_010--Hb_170532_010 Hb_171619_010 Hb_171619_010 Hb_124961_010--Hb_171619_010 Hb_004570_050 Hb_004570_050 Hb_124961_010--Hb_004570_050 Hb_000160_150 Hb_000160_150 Hb_124961_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_124961_010--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_124961_010--Hb_101020_010 Hb_004935_080 Hb_004935_080 Hb_070469_010--Hb_004935_080 Hb_070469_010--Hb_076874_010 Hb_070469_010--Hb_126295_010 Hb_003925_070 Hb_003925_070 Hb_070469_010--Hb_003925_070 Hb_121467_010 Hb_121467_010 Hb_070469_010--Hb_121467_010 Hb_057247_010 Hb_057247_010 Hb_005883_040--Hb_057247_010 Hb_070385_010 Hb_070385_010 Hb_005883_040--Hb_070385_010 Hb_005883_040--Hb_101020_010 Hb_005883_040--Hb_007137_060 Hb_130134_030 Hb_130134_030 Hb_005883_040--Hb_130134_030 Hb_077211_010 Hb_077211_010 Hb_005883_040--Hb_077211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222192 0.0865969 1.19856 0.491449 0.588702 1.26022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107364 0.168743 0 0.173444 0

CAGE analysis