Hb_000245_220

Information

Type -
Description -
Location Contig245: 185300-189890
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01710g
description POPTRDRAFT_761837; hypothetical protein
nr
ID XP_012074033.1
description PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09514 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25548: 185344-188811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_220 0.0 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
2 Hb_000331_110 0.0699870579 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
3 Hb_000816_250 0.0731388762 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
4 Hb_162286_010 0.0741465174 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
5 Hb_011618_050 0.074676011 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
6 Hb_000035_500 0.0771710496 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]
7 Hb_001186_090 0.0786675477 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
8 Hb_005144_090 0.079030227 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
9 Hb_004970_190 0.0794709288 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000270_680 0.0824309375 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
11 Hb_000869_020 0.0838620823 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
12 Hb_001268_240 0.0843517899 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
13 Hb_003638_130 0.0856073609 - - PREDICTED: uncharacterized protein LOC105645779 [Jatropha curcas]
14 Hb_000049_140 0.0856307639 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
15 Hb_032986_010 0.0860053826 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
16 Hb_000053_110 0.0867272715 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008642_040 0.0868338058 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
18 Hb_000260_100 0.0881106643 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005542_130 0.0885875615 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
20 Hb_107879_010 0.0886703575 - - phosphoglycerate mutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000245_220 Hb_000245_220 Hb_000331_110 Hb_000331_110 Hb_000245_220--Hb_000331_110 Hb_000816_250 Hb_000816_250 Hb_000245_220--Hb_000816_250 Hb_162286_010 Hb_162286_010 Hb_000245_220--Hb_162286_010 Hb_011618_050 Hb_011618_050 Hb_000245_220--Hb_011618_050 Hb_000035_500 Hb_000035_500 Hb_000245_220--Hb_000035_500 Hb_001186_090 Hb_001186_090 Hb_000245_220--Hb_001186_090 Hb_079526_030 Hb_079526_030 Hb_000331_110--Hb_079526_030 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_003878_110 Hb_003878_110 Hb_000331_110--Hb_003878_110 Hb_001089_110 Hb_001089_110 Hb_000331_110--Hb_001089_110 Hb_001821_160 Hb_001821_160 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_014834_150 Hb_014834_150 Hb_000816_250--Hb_014834_150 Hb_000313_220 Hb_000313_220 Hb_000816_250--Hb_000313_220 Hb_002889_010 Hb_002889_010 Hb_000816_250--Hb_002889_010 Hb_005779_010 Hb_005779_010 Hb_000816_250--Hb_005779_010 Hb_001946_400 Hb_001946_400 Hb_000816_250--Hb_001946_400 Hb_000976_140 Hb_000976_140 Hb_000816_250--Hb_000976_140 Hb_162286_010--Hb_000331_110 Hb_162286_010--Hb_003878_110 Hb_007007_060 Hb_007007_060 Hb_162286_010--Hb_007007_060 Hb_162286_010--Hb_079526_030 Hb_002374_260 Hb_002374_260 Hb_162286_010--Hb_002374_260 Hb_005144_090 Hb_005144_090 Hb_011618_050--Hb_005144_090 Hb_000046_040 Hb_000046_040 Hb_011618_050--Hb_000046_040 Hb_000649_230 Hb_000649_230 Hb_011618_050--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_011618_050--Hb_000751_030 Hb_000049_140 Hb_000049_140 Hb_011618_050--Hb_000049_140 Hb_006570_140 Hb_006570_140 Hb_000035_500--Hb_006570_140 Hb_001922_170 Hb_001922_170 Hb_000035_500--Hb_001922_170 Hb_001268_240 Hb_001268_240 Hb_000035_500--Hb_001268_240 Hb_000731_160 Hb_000731_160 Hb_000035_500--Hb_000731_160 Hb_029879_010 Hb_029879_010 Hb_000035_500--Hb_029879_010 Hb_001186_090--Hb_000331_110 Hb_001186_090--Hb_000260_680 Hb_003943_050 Hb_003943_050 Hb_001186_090--Hb_003943_050 Hb_003159_140 Hb_003159_140 Hb_001186_090--Hb_003159_140 Hb_022132_050 Hb_022132_050 Hb_001186_090--Hb_022132_050 Hb_002119_080 Hb_002119_080 Hb_001186_090--Hb_002119_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6781 4.18215 11.4346 6.67213 8.18662 6.98848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.47592 7.99522 4.6802 6.74041 8.14939

CAGE analysis