Hb_000247_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig247: 43894-45158
Sequence    

Annotation

kegg
ID vvi:100262373
description transcription factor ORG2
nr
ID XP_012072671.1
description PREDICTED: transcription factor ORG2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9M1K1
description Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1
trembl
ID A0A067KNN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06733 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor org2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000247_060 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor ORG2-like isoform X1 [Jatropha curcas]
2 Hb_000450_110 0.0443378651 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_009004_020 0.108251096 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_000758_060 0.114725727 - - PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
5 Hb_002474_020 0.1162103066 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
6 Hb_003882_030 0.124981886 - - putative retrotransposon protein [Phyllostachys edulis]
7 Hb_002874_250 0.1250712944 - - -
8 Hb_000010_230 0.1251496301 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
9 Hb_004453_120 0.1262653103 - - ammonium transporter, putative [Ricinus communis]
10 Hb_157680_010 0.1267016786 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
11 Hb_158575_010 0.126800627 - - conserved hypothetical protein [Ricinus communis]
12 Hb_176140_010 0.1330541909 - - polyprotein [Oryza australiensis]
13 Hb_001779_050 0.1333702908 - - polyprotein [Ananas comosus]
14 Hb_184398_010 0.1369119138 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_001338_010 0.1381818551 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
16 Hb_001681_010 0.1384794039 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
17 Hb_000031_070 0.1402480779 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
18 Hb_001267_020 0.1410019415 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
19 Hb_004466_080 0.1475309698 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
20 Hb_048694_010 0.1481846758 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000247_060 Hb_000247_060 Hb_000450_110 Hb_000450_110 Hb_000247_060--Hb_000450_110 Hb_009004_020 Hb_009004_020 Hb_000247_060--Hb_009004_020 Hb_000758_060 Hb_000758_060 Hb_000247_060--Hb_000758_060 Hb_002474_020 Hb_002474_020 Hb_000247_060--Hb_002474_020 Hb_003882_030 Hb_003882_030 Hb_000247_060--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_000247_060--Hb_002874_250 Hb_006616_070 Hb_006616_070 Hb_000450_110--Hb_006616_070 Hb_001267_020 Hb_001267_020 Hb_000450_110--Hb_001267_020 Hb_000450_110--Hb_002474_020 Hb_000450_110--Hb_009004_020 Hb_002395_040 Hb_002395_040 Hb_000450_110--Hb_002395_040 Hb_002764_020 Hb_002764_020 Hb_009004_020--Hb_002764_020 Hb_048694_010 Hb_048694_010 Hb_009004_020--Hb_048694_010 Hb_009004_020--Hb_000758_060 Hb_002600_110 Hb_002600_110 Hb_009004_020--Hb_002600_110 Hb_000768_080 Hb_000768_080 Hb_009004_020--Hb_000768_080 Hb_002445_020 Hb_002445_020 Hb_009004_020--Hb_002445_020 Hb_000043_060 Hb_000043_060 Hb_000758_060--Hb_000043_060 Hb_002294_020 Hb_002294_020 Hb_000758_060--Hb_002294_020 Hb_004466_080 Hb_004466_080 Hb_000758_060--Hb_004466_080 Hb_025654_010 Hb_025654_010 Hb_000758_060--Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_000758_060--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_000758_060--Hb_187301_010 Hb_002474_020--Hb_001267_020 Hb_004291_060 Hb_004291_060 Hb_002474_020--Hb_004291_060 Hb_003559_010 Hb_003559_010 Hb_002474_020--Hb_003559_010 Hb_000138_180 Hb_000138_180 Hb_002474_020--Hb_000138_180 Hb_003882_030--Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_003882_030--Hb_000010_230 Hb_004453_120 Hb_004453_120 Hb_003882_030--Hb_004453_120 Hb_157680_010 Hb_157680_010 Hb_003882_030--Hb_157680_010 Hb_158575_010 Hb_158575_010 Hb_003882_030--Hb_158575_010 Hb_176140_010 Hb_176140_010 Hb_003882_030--Hb_176140_010 Hb_002874_250--Hb_000010_230 Hb_002874_250--Hb_004453_120 Hb_002874_250--Hb_157680_010 Hb_002874_250--Hb_158575_010 Hb_002874_250--Hb_176140_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0324991 0 0.0920783 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.927468

CAGE analysis