Hb_000247_140

Information

Type transcription factor
Description TF Family: C2H2
Location Contig247: 254403-255395
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21520g
description zinc finger family protein
nr
ID XP_011040791.1
description PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
swissprot
ID O65499
description Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1
trembl
ID U5GMX5
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s21520g PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein zat3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25634: 254952-255150 , PASA_asmbl_25635: 256388-260176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000247_140 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
2 Hb_062226_150 0.1069700656 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
3 Hb_003747_250 0.1204391813 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
4 Hb_008406_070 0.1363107463 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
5 Hb_003581_050 0.1374216316 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
6 Hb_000563_630 0.1383978958 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
7 Hb_008749_010 0.1408038292 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
8 Hb_002518_220 0.1434025242 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
9 Hb_004899_110 0.1473342764 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
10 Hb_006120_210 0.1485147059 - - gibberellin 20-oxidase, putative [Ricinus communis]
11 Hb_004678_030 0.1504683167 - - fructokinase [Manihot esculenta]
12 Hb_021576_160 0.1510064314 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
13 Hb_000742_130 0.1512288059 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
14 Hb_000210_160 0.1530849772 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_004324_100 0.1537482164 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_002639_050 0.1543989549 - - multicopper oxidase, putative [Ricinus communis]
17 Hb_007130_020 0.1553399216 - - -
18 Hb_005408_080 0.1554966157 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
19 Hb_003266_090 0.1568048209 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
20 Hb_012272_010 0.1570342984 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_000247_140 Hb_000247_140 Hb_062226_150 Hb_062226_150 Hb_000247_140--Hb_062226_150 Hb_003747_250 Hb_003747_250 Hb_000247_140--Hb_003747_250 Hb_008406_070 Hb_008406_070 Hb_000247_140--Hb_008406_070 Hb_003581_050 Hb_003581_050 Hb_000247_140--Hb_003581_050 Hb_000563_630 Hb_000563_630 Hb_000247_140--Hb_000563_630 Hb_008749_010 Hb_008749_010 Hb_000247_140--Hb_008749_010 Hb_005408_080 Hb_005408_080 Hb_062226_150--Hb_005408_080 Hb_002400_040 Hb_002400_040 Hb_062226_150--Hb_002400_040 Hb_012272_010 Hb_012272_010 Hb_062226_150--Hb_012272_010 Hb_182970_010 Hb_182970_010 Hb_062226_150--Hb_182970_010 Hb_021576_160 Hb_021576_160 Hb_062226_150--Hb_021576_160 Hb_006120_210 Hb_006120_210 Hb_003747_250--Hb_006120_210 Hb_003747_250--Hb_008749_010 Hb_000742_130 Hb_000742_130 Hb_003747_250--Hb_000742_130 Hb_008806_040 Hb_008806_040 Hb_003747_250--Hb_008806_040 Hb_004228_070 Hb_004228_070 Hb_003747_250--Hb_004228_070 Hb_000365_430 Hb_000365_430 Hb_003747_250--Hb_000365_430 Hb_002374_030 Hb_002374_030 Hb_008406_070--Hb_002374_030 Hb_000071_090 Hb_000071_090 Hb_008406_070--Hb_000071_090 Hb_138086_010 Hb_138086_010 Hb_008406_070--Hb_138086_010 Hb_000878_090 Hb_000878_090 Hb_008406_070--Hb_000878_090 Hb_011915_020 Hb_011915_020 Hb_008406_070--Hb_011915_020 Hb_001160_050 Hb_001160_050 Hb_008406_070--Hb_001160_050 Hb_003266_090 Hb_003266_090 Hb_003581_050--Hb_003266_090 Hb_007221_040 Hb_007221_040 Hb_003581_050--Hb_007221_040 Hb_002518_220 Hb_002518_220 Hb_003581_050--Hb_002518_220 Hb_007441_360 Hb_007441_360 Hb_003581_050--Hb_007441_360 Hb_010174_200 Hb_010174_200 Hb_003581_050--Hb_010174_200 Hb_007257_070 Hb_007257_070 Hb_003581_050--Hb_007257_070 Hb_034507_090 Hb_034507_090 Hb_000563_630--Hb_034507_090 Hb_000210_160 Hb_000210_160 Hb_000563_630--Hb_000210_160 Hb_000563_630--Hb_000742_130 Hb_000563_630--Hb_006120_210 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_003849_200 Hb_003849_200 Hb_000563_630--Hb_003849_200 Hb_000365_180 Hb_000365_180 Hb_008749_010--Hb_000365_180 Hb_008749_010--Hb_000878_090 Hb_000163_180 Hb_000163_180 Hb_008749_010--Hb_000163_180 Hb_008749_010--Hb_004228_070 Hb_001989_070 Hb_001989_070 Hb_008749_010--Hb_001989_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0502277 0.979785 1.43786 1.66933 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0511218 0.0804138 0 0.226405 0.493271

CAGE analysis