Hb_000247_150

Information

Type -
Description -
Location Contig247: 256261-260126
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa009153mg
description hypothetical protein
nr
ID XP_012072667.1
description PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
swissprot
ID Q5HZL9
description Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Xenopus laevis GN=hdhd3 PE=2 SV=1
trembl
ID A0A067KNY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06729 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase domain-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25635: 256388-260176 , PASA_asmbl_25636: 257827-257927
cDNA
(Sanger)
(ID:Location)		 022_P21.ab1: 258027-260176

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000247_150 0.0 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
2 Hb_035677_010 0.0598842774 - - conserved hypothetical protein [Ricinus communis]
3 Hb_013720_010 0.083009368 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
4 Hb_000331_710 0.0905781695 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_097007_020 0.1075639492 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
6 Hb_039650_030 0.1159051917 - - hypothetical protein RCOM_2128750 [Ricinus communis]
7 Hb_012496_010 0.116160505 - - kinase, putative [Ricinus communis]
8 Hb_001104_270 0.1166433007 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
9 Hb_000027_060 0.1198511579 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
10 Hb_009476_010 0.1219700447 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
11 Hb_004945_050 0.1224666007 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
12 Hb_000571_030 0.1231082048 - - ammonium transporter, putative [Ricinus communis]
13 Hb_004899_360 0.1289122645 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_006698_020 0.1314206102 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
15 Hb_009189_010 0.1317389289 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
16 Hb_006907_020 0.1352180498 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
17 Hb_003811_030 0.1358393822 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
18 Hb_000060_100 0.1364776178 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
19 Hb_006873_030 0.1378772542 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_002849_030 0.1399029828 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]

Gene co-expression network

sample Hb_000247_150 Hb_000247_150 Hb_035677_010 Hb_035677_010 Hb_000247_150--Hb_035677_010 Hb_013720_010 Hb_013720_010 Hb_000247_150--Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_000247_150--Hb_000331_710 Hb_097007_020 Hb_097007_020 Hb_000247_150--Hb_097007_020 Hb_039650_030 Hb_039650_030 Hb_000247_150--Hb_039650_030 Hb_012496_010 Hb_012496_010 Hb_000247_150--Hb_012496_010 Hb_035677_010--Hb_012496_010 Hb_035677_010--Hb_097007_020 Hb_000571_030 Hb_000571_030 Hb_035677_010--Hb_000571_030 Hb_035677_010--Hb_013720_010 Hb_004899_360 Hb_004899_360 Hb_035677_010--Hb_004899_360 Hb_013720_010--Hb_000331_710 Hb_006698_020 Hb_006698_020 Hb_013720_010--Hb_006698_020 Hb_000027_060 Hb_000027_060 Hb_013720_010--Hb_000027_060 Hb_001104_270 Hb_001104_270 Hb_013720_010--Hb_001104_270 Hb_008667_030 Hb_008667_030 Hb_013720_010--Hb_008667_030 Hb_000331_710--Hb_000027_060 Hb_000705_130 Hb_000705_130 Hb_000331_710--Hb_000705_130 Hb_004712_140 Hb_004712_140 Hb_000331_710--Hb_004712_140 Hb_000331_710--Hb_006698_020 Hb_097007_020--Hb_004899_360 Hb_097007_020--Hb_012496_010 Hb_006907_020 Hb_006907_020 Hb_097007_020--Hb_006907_020 Hb_097007_020--Hb_000571_030 Hb_000175_250 Hb_000175_250 Hb_039650_030--Hb_000175_250 Hb_004924_030 Hb_004924_030 Hb_039650_030--Hb_004924_030 Hb_006873_030 Hb_006873_030 Hb_039650_030--Hb_006873_030 Hb_039650_030--Hb_035677_010 Hb_007328_010 Hb_007328_010 Hb_039650_030--Hb_007328_010 Hb_113396_020 Hb_113396_020 Hb_012496_010--Hb_113396_020 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_012496_010--Hb_000127_220 Hb_012496_010--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_012496_010--Hb_000422_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.18671 1387.59 383.02 219.593 1.7873 2.5451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.54256 0.884082 0.511383 65.2166 199.534

CAGE analysis