Hb_000248_030

Information

Type -
Description -
Location Contig248: 67811-69814
Sequence    

Annotation

kegg
ID bpg:Bathy10g03460
description hypothetical protein
nr
ID XP_002786624.1
description hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
swissprot
ID -
description -
trembl
ID C5KB94
description Putative uncharacterized protein OS=Perkinsus marinus (strain ATCC 50983 / TXsc) GN=Pmar_PMAR005331 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25826: 26421-69526 , PASA_asmbl_25827: 69571-85348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000248_030 0.0 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
2 Hb_000248_010 0.1206355984 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
3 Hb_005933_010 0.1347181018 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
4 Hb_001235_060 0.1377244435 - - -
5 Hb_122567_020 0.1512647604 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
6 Hb_073559_010 0.1520026962 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
7 Hb_002960_050 0.1616693525 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
8 Hb_169170_010 0.1690725291 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
9 Hb_032531_060 0.1691201383 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
10 Hb_000002_030 0.1788914931 - - -
11 Hb_079212_010 0.184059994 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000204_020 0.1867299253 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
13 Hb_000617_170 0.1869258173 - - -
14 Hb_000805_300 0.1877483594 - - -
15 Hb_177103_010 0.187975082 - - PREDICTED: histone H2AX [Elaeis guineensis]
16 Hb_034579_010 0.1879996162 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
17 Hb_005731_140 0.1956714811 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
18 Hb_008277_030 0.1971684022 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
19 Hb_088065_010 0.2040780872 - - hypothetical protein glysoja_007934 [Glycine soja]
20 Hb_006198_090 0.2047043057 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_000248_030 Hb_000248_030 Hb_000248_010 Hb_000248_010 Hb_000248_030--Hb_000248_010 Hb_005933_010 Hb_005933_010 Hb_000248_030--Hb_005933_010 Hb_001235_060 Hb_001235_060 Hb_000248_030--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_000248_030--Hb_122567_020 Hb_073559_010 Hb_073559_010 Hb_000248_030--Hb_073559_010 Hb_002960_050 Hb_002960_050 Hb_000248_030--Hb_002960_050 Hb_000248_010--Hb_002960_050 Hb_000248_010--Hb_073559_010 Hb_000248_010--Hb_001235_060 Hb_088065_010 Hb_088065_010 Hb_000248_010--Hb_088065_010 Hb_000248_010--Hb_005933_010 Hb_005933_010--Hb_122567_020 Hb_005933_010--Hb_001235_060 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_059952_010 Hb_059952_010 Hb_005933_010--Hb_059952_010 Hb_001235_060--Hb_122567_020 Hb_000805_300 Hb_000805_300 Hb_001235_060--Hb_000805_300 Hb_000002_030 Hb_000002_030 Hb_001235_060--Hb_000002_030 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_073559_010--Hb_088065_010 Hb_073559_010--Hb_002960_050 Hb_168737_010 Hb_168737_010 Hb_073559_010--Hb_168737_010 Hb_005965_010 Hb_005965_010 Hb_073559_010--Hb_005965_010 Hb_000295_100 Hb_000295_100 Hb_002960_050--Hb_000295_100 Hb_002783_060 Hb_002783_060 Hb_002960_050--Hb_002783_060 Hb_002960_050--Hb_005965_010 Hb_106005_010 Hb_106005_010 Hb_002960_050--Hb_106005_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47391 0.50451 0.426062 8.8189 3.34241 70.1839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.82504 2.61169 4.66294 4.97614 0.858951

CAGE analysis