Hb_000248_050

Information

Type -
Description -
Location Contig248: 82516-85445
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03080g
description POPTRDRAFT_652518; hypothetical protein
nr
ID XP_012088592.1
description PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JIT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26715 PE=4 SV=1
Gene Ontology
ID GO:0044763
description polyglutamine-binding protein 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25827: 69571-85348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000248_050 0.0 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
2 Hb_000152_740 0.0961351286 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
3 Hb_118301_010 0.1080218004 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]
4 Hb_006455_080 0.1137015938 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
5 Hb_002918_070 0.1147699955 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
6 Hb_004881_050 0.1158368234 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
7 Hb_005000_270 0.1160792045 - - unnamed protein product [Vitis vinifera]
8 Hb_003711_040 0.1167272893 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
9 Hb_174865_050 0.1168056896 - - PREDICTED: neuroguidin [Jatropha curcas]
10 Hb_000372_040 0.1170407135 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_001252_170 0.11874224 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
12 Hb_001477_010 0.1191375123 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
13 Hb_000136_150 0.1207973559 - - hypothetical protein VITISV_038366 [Vitis vinifera]
14 Hb_022288_010 0.123900894 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
15 Hb_006455_090 0.1248159635 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
16 Hb_000805_310 0.1248413014 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
17 Hb_002475_050 0.1264480286 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
18 Hb_063047_010 0.12739674 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
19 Hb_001486_120 0.1274698417 - - PREDICTED: importin-5-like [Jatropha curcas]
20 Hb_000212_280 0.128589472 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]

Gene co-expression network

sample Hb_000248_050 Hb_000248_050 Hb_000152_740 Hb_000152_740 Hb_000248_050--Hb_000152_740 Hb_118301_010 Hb_118301_010 Hb_000248_050--Hb_118301_010 Hb_006455_080 Hb_006455_080 Hb_000248_050--Hb_006455_080 Hb_002918_070 Hb_002918_070 Hb_000248_050--Hb_002918_070 Hb_004881_050 Hb_004881_050 Hb_000248_050--Hb_004881_050 Hb_005000_270 Hb_005000_270 Hb_000248_050--Hb_005000_270 Hb_063047_010 Hb_063047_010 Hb_000152_740--Hb_063047_010 Hb_000152_740--Hb_118301_010 Hb_005000_100 Hb_005000_100 Hb_000152_740--Hb_005000_100 Hb_000042_230 Hb_000042_230 Hb_000152_740--Hb_000042_230 Hb_000017_340 Hb_000017_340 Hb_000152_740--Hb_000017_340 Hb_000028_030 Hb_000028_030 Hb_000152_740--Hb_000028_030 Hb_118301_010--Hb_000017_340 Hb_005288_120 Hb_005288_120 Hb_118301_010--Hb_005288_120 Hb_001252_170 Hb_001252_170 Hb_118301_010--Hb_001252_170 Hb_001477_010 Hb_001477_010 Hb_118301_010--Hb_001477_010 Hb_118301_010--Hb_000028_030 Hb_006455_090 Hb_006455_090 Hb_006455_080--Hb_006455_090 Hb_006455_110 Hb_006455_110 Hb_006455_080--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_006455_080--Hb_003711_040 Hb_000295_100 Hb_000295_100 Hb_006455_080--Hb_000295_100 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_002918_070--Hb_005000_270 Hb_000211_090 Hb_000211_090 Hb_002918_070--Hb_000211_090 Hb_000212_280 Hb_000212_280 Hb_002918_070--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002918_070--Hb_001486_120 Hb_000779_040 Hb_000779_040 Hb_002918_070--Hb_000779_040 Hb_000134_360 Hb_000134_360 Hb_002918_070--Hb_000134_360 Hb_079326_010 Hb_079326_010 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_004881_050--Hb_063047_010 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.2838 8.35774 4.41123 8.08833 44.5871 102.813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8682 7.29731 17.3022 19.7686 8.67178

CAGE analysis