Hb_000248_080

Information

Type -
Description -
Location Contig248: 128375-128785
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000248_080 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_136973_020 0.0305250324 - - -
3 Hb_137862_020 0.0444104832 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
4 Hb_009083_020 0.0537375067 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
5 Hb_002163_070 0.0599854077 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
6 Hb_005928_010 0.0638755222 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
7 Hb_160950_010 0.0694746396 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
8 Hb_000277_030 0.0717939451 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
9 Hb_010252_010 0.0745648843 - - -
10 Hb_023712_020 0.0773516916 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
11 Hb_001002_020 0.0867203247 - - ATP binding protein, putative [Ricinus communis]
12 Hb_172983_010 0.0886793715 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000170_260 0.1014037001 - - amino acid transporter, putative [Ricinus communis]
14 Hb_057721_010 0.1017143202 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_054165_010 0.1028466854 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_003847_090 0.1033424776 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
17 Hb_119583_030 0.1072357749 - - unnamed protein product [Vitis vinifera]
18 Hb_002849_010 0.1109446834 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
19 Hb_000628_050 0.1127118426 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_006197_010 0.1164279029 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000248_080 Hb_000248_080 Hb_136973_020 Hb_136973_020 Hb_000248_080--Hb_136973_020 Hb_137862_020 Hb_137862_020 Hb_000248_080--Hb_137862_020 Hb_009083_020 Hb_009083_020 Hb_000248_080--Hb_009083_020 Hb_002163_070 Hb_002163_070 Hb_000248_080--Hb_002163_070 Hb_005928_010 Hb_005928_010 Hb_000248_080--Hb_005928_010 Hb_160950_010 Hb_160950_010 Hb_000248_080--Hb_160950_010 Hb_136973_020--Hb_005928_010 Hb_000277_030 Hb_000277_030 Hb_136973_020--Hb_000277_030 Hb_001002_020 Hb_001002_020 Hb_136973_020--Hb_001002_020 Hb_054165_010 Hb_054165_010 Hb_136973_020--Hb_054165_010 Hb_136973_020--Hb_137862_020 Hb_137862_020--Hb_002163_070 Hb_023712_020 Hb_023712_020 Hb_137862_020--Hb_023712_020 Hb_057721_010 Hb_057721_010 Hb_137862_020--Hb_057721_010 Hb_137862_020--Hb_009083_020 Hb_010252_010 Hb_010252_010 Hb_137862_020--Hb_010252_010 Hb_009083_020--Hb_160950_010 Hb_009083_020--Hb_002163_070 Hb_009083_020--Hb_010252_010 Hb_039440_010 Hb_039440_010 Hb_009083_020--Hb_039440_010 Hb_002163_070--Hb_010252_010 Hb_002163_070--Hb_160950_010 Hb_119583_030 Hb_119583_030 Hb_002163_070--Hb_119583_030 Hb_005928_010--Hb_001002_020 Hb_005928_010--Hb_000277_030 Hb_005928_010--Hb_054165_010 Hb_003847_090 Hb_003847_090 Hb_005928_010--Hb_003847_090 Hb_160950_010--Hb_010252_010 Hb_160950_010--Hb_039440_010 Hb_185437_010 Hb_185437_010 Hb_160950_010--Hb_185437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.139827 0.269456 0.259274 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis