Hb_000248_090

Information

Type -
Description -
Location Contig248: 169775-171127
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_009618205.1
description PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000248_090 0.0 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
2 Hb_005656_110 0.0099805302 - - cytochrome P450, putative [Ricinus communis]
3 Hb_003938_220 0.0242752016 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_004607_010 0.029292934 - - -
5 Hb_002903_030 0.0510912368 - - polyphenol oxidase [Cydonia oblonga]
6 Hb_001357_370 0.0590848864 - - -
7 Hb_186115_010 0.0616295855 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_146361_020 0.063246866 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
9 Hb_004968_110 0.0652707082 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
10 Hb_000023_040 0.0670045808 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_001862_020 0.0762740736 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
12 Hb_007227_010 0.0765240947 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
13 Hb_003407_020 0.0806522504 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
14 Hb_005714_080 0.0808926231 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
15 Hb_052135_010 0.0826648064 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
16 Hb_170365_010 0.0827645008 - - Retrotransposon protein, putative [Theobroma cacao]
17 Hb_183433_020 0.083364378 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
18 Hb_181803_010 0.0845691023 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_004000_030 0.0846427252 - - putative retrotransposon protein [Phyllostachys edulis]
20 Hb_185830_040 0.0858058385 - - hypothetical protein JCGZ_16423 [Jatropha curcas]

Gene co-expression network

sample Hb_000248_090 Hb_000248_090 Hb_005656_110 Hb_005656_110 Hb_000248_090--Hb_005656_110 Hb_003938_220 Hb_003938_220 Hb_000248_090--Hb_003938_220 Hb_004607_010 Hb_004607_010 Hb_000248_090--Hb_004607_010 Hb_002903_030 Hb_002903_030 Hb_000248_090--Hb_002903_030 Hb_001357_370 Hb_001357_370 Hb_000248_090--Hb_001357_370 Hb_186115_010 Hb_186115_010 Hb_000248_090--Hb_186115_010 Hb_005656_110--Hb_003938_220 Hb_005656_110--Hb_004607_010 Hb_005656_110--Hb_002903_030 Hb_005656_110--Hb_186115_010 Hb_146361_020 Hb_146361_020 Hb_005656_110--Hb_146361_020 Hb_003938_220--Hb_002903_030 Hb_003938_220--Hb_186115_010 Hb_003938_220--Hb_146361_020 Hb_001862_020 Hb_001862_020 Hb_003938_220--Hb_001862_020 Hb_004607_010--Hb_001357_370 Hb_004968_110 Hb_004968_110 Hb_004607_010--Hb_004968_110 Hb_000023_040 Hb_000023_040 Hb_004607_010--Hb_000023_040 Hb_007227_010 Hb_007227_010 Hb_004607_010--Hb_007227_010 Hb_002903_030--Hb_186115_010 Hb_002903_030--Hb_146361_020 Hb_002903_030--Hb_001862_020 Hb_003407_020 Hb_003407_020 Hb_002903_030--Hb_003407_020 Hb_001357_370--Hb_004968_110 Hb_001357_370--Hb_000023_040 Hb_001357_370--Hb_007227_010 Hb_005714_080 Hb_005714_080 Hb_001357_370--Hb_005714_080 Hb_052135_010 Hb_052135_010 Hb_001357_370--Hb_052135_010 Hb_170365_010 Hb_170365_010 Hb_001357_370--Hb_170365_010 Hb_186115_010--Hb_146361_020 Hb_186115_010--Hb_001862_020 Hb_186115_010--Hb_003407_020 Hb_176232_040 Hb_176232_040 Hb_186115_010--Hb_176232_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0574832 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0806713 0

CAGE analysis