Hb_000248_100

Information

Type -
Description -
Location Contig248: 177348-182071
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04760g
description POPTRDRAFT_1080427; hypothetical protein
nr
ID XP_011048078.1
description PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
swissprot
ID Q70G58
description Thioredoxin reductase NTRC OS=Oryza sativa subsp. japonica GN=Os07g0657900 PE=1 SV=2
trembl
ID B9H9S9
description Thioredoxin reductase OS=Populus trichocarpa GN=POPTR_0006s04760g PE=3 SV=2
Gene Ontology
ID GO:0005737
description nadph-dependent thioredoxin reductase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25829: 177323-182050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000248_100 0.0 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
2 Hb_158845_060 0.1050977979 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
3 Hb_024758_020 0.1091334979 - - acyl-CoA binding protein 3B [Vernicia fordii]
4 Hb_000094_150 0.1106682524 - - -
5 Hb_003964_110 0.1117206658 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
6 Hb_003050_150 0.1173094602 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
7 Hb_000261_310 0.1183039049 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
8 Hb_000665_260 0.1190222033 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
9 Hb_000258_090 0.119920466 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
10 Hb_086639_100 0.1201021217 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105646787 [Jatropha curcas]
11 Hb_002010_090 0.1205297386 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
12 Hb_009078_020 0.1207915668 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
13 Hb_083078_010 0.1214552194 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
14 Hb_002739_120 0.1223018498 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
15 Hb_000227_320 0.1233154179 - - unnamed protein product [Vitis vinifera]
16 Hb_010407_030 0.123781311 - - PREDICTED: casein kinase I-like [Jatropha curcas]
17 Hb_000984_140 0.1243950411 - - PREDICTED: xylulose kinase [Jatropha curcas]
18 Hb_005854_040 0.1257286105 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000297_030 0.1260191889 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
20 Hb_002316_170 0.1279862082 - - purine permease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000248_100 Hb_000248_100 Hb_158845_060 Hb_158845_060 Hb_000248_100--Hb_158845_060 Hb_024758_020 Hb_024758_020 Hb_000248_100--Hb_024758_020 Hb_000094_150 Hb_000094_150 Hb_000248_100--Hb_000094_150 Hb_003964_110 Hb_003964_110 Hb_000248_100--Hb_003964_110 Hb_003050_150 Hb_003050_150 Hb_000248_100--Hb_003050_150 Hb_000261_310 Hb_000261_310 Hb_000248_100--Hb_000261_310 Hb_158845_060--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_158845_060--Hb_000599_360 Hb_000297_030 Hb_000297_030 Hb_158845_060--Hb_000297_030 Hb_080147_050 Hb_080147_050 Hb_158845_060--Hb_080147_050 Hb_001085_080 Hb_001085_080 Hb_158845_060--Hb_001085_080 Hb_021977_010 Hb_021977_010 Hb_158845_060--Hb_021977_010 Hb_002849_050 Hb_002849_050 Hb_024758_020--Hb_002849_050 Hb_024758_020--Hb_158845_060 Hb_005298_020 Hb_005298_020 Hb_024758_020--Hb_005298_020 Hb_024758_020--Hb_000297_030 Hb_032823_020 Hb_032823_020 Hb_024758_020--Hb_032823_020 Hb_024758_020--Hb_003964_110 Hb_002010_090 Hb_002010_090 Hb_000094_150--Hb_002010_090 Hb_000256_160 Hb_000256_160 Hb_000094_150--Hb_000256_160 Hb_001059_060 Hb_001059_060 Hb_000094_150--Hb_001059_060 Hb_000094_150--Hb_000261_310 Hb_001404_090 Hb_001404_090 Hb_000094_150--Hb_001404_090 Hb_008165_020 Hb_008165_020 Hb_003964_110--Hb_008165_020 Hb_000227_320 Hb_000227_320 Hb_003964_110--Hb_000227_320 Hb_000331_100 Hb_000331_100 Hb_003964_110--Hb_000331_100 Hb_001414_010 Hb_001414_010 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260 Hb_000732_230 Hb_000732_230 Hb_003050_150--Hb_000732_230 Hb_001205_180 Hb_001205_180 Hb_003050_150--Hb_001205_180 Hb_115513_040 Hb_115513_040 Hb_003050_150--Hb_115513_040 Hb_004800_130 Hb_004800_130 Hb_003050_150--Hb_004800_130 Hb_002025_270 Hb_002025_270 Hb_003050_150--Hb_002025_270 Hb_002553_010 Hb_002553_010 Hb_003050_150--Hb_002553_010 Hb_000261_310--Hb_000256_160 Hb_000309_030 Hb_000309_030 Hb_000261_310--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000261_310--Hb_000116_240 Hb_007575_030 Hb_007575_030 Hb_000261_310--Hb_007575_030 Hb_004096_220 Hb_004096_220 Hb_000261_310--Hb_004096_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51574 10.1771 13.7094 12.6691 5.18335 3.12913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3976 2.84256 1.04532 13.5439 8.86617

CAGE analysis