Hb_000248_120

Information

Type -
Description -
Location Contig248: 208574-214643
Sequence    

Annotation

kegg
ID pda:103699337
description uncharacterized LOC103699337
nr
ID XP_009614563.1
description PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID W5DL39
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000248_120 0.0 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
2 Hb_000407_060 0.2420053139 - - -
3 Hb_012103_010 0.2571998673 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
4 Hb_000175_550 0.2615253131 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
5 Hb_111834_020 0.2651454856 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
6 Hb_003238_010 0.2685589427 - - PREDICTED: uncharacterized protein LOC104880636 [Vitis vinifera]
7 Hb_000701_070 0.2780046306 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_001032_040 0.2800617654 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
9 Hb_003658_030 0.2861010817 - - -
10 Hb_002367_120 0.2987555248 - - -
11 Hb_001623_440 0.3072058786 - - hypothetical protein JCGZ_12908 [Jatropha curcas]
12 Hb_007527_030 0.3138132073 - - -
13 Hb_123304_010 0.3186318246 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
14 Hb_006920_050 0.3187230066 - - endo-1,4-beta-glucanase [Vigna radiata var. radiata]
15 Hb_027337_070 0.3361926508 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
16 Hb_009164_020 0.3440021743 - - hypothetical protein PRUPE_ppa026212mg, partial [Prunus persica]
17 Hb_104498_030 0.3520966208 - - hypothetical protein JCGZ_11092 [Jatropha curcas]
18 Hb_016777_030 0.3540833937 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
19 Hb_147996_010 0.3543424915 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
20 Hb_005214_020 0.3658416859 - - hypothetical protein JCGZ_12886 [Jatropha curcas]

Gene co-expression network

sample Hb_000248_120 Hb_000248_120 Hb_000407_060 Hb_000407_060 Hb_000248_120--Hb_000407_060 Hb_012103_010 Hb_012103_010 Hb_000248_120--Hb_012103_010 Hb_000175_550 Hb_000175_550 Hb_000248_120--Hb_000175_550 Hb_111834_020 Hb_111834_020 Hb_000248_120--Hb_111834_020 Hb_003238_010 Hb_003238_010 Hb_000248_120--Hb_003238_010 Hb_000701_070 Hb_000701_070 Hb_000248_120--Hb_000701_070 Hb_002367_120 Hb_002367_120 Hb_000407_060--Hb_002367_120 Hb_172632_020 Hb_172632_020 Hb_000407_060--Hb_172632_020 Hb_027337_070 Hb_027337_070 Hb_000407_060--Hb_027337_070 Hb_004361_030 Hb_004361_030 Hb_000407_060--Hb_004361_030 Hb_057217_010 Hb_057217_010 Hb_000407_060--Hb_057217_010 Hb_000191_160 Hb_000191_160 Hb_012103_010--Hb_000191_160 Hb_007223_020 Hb_007223_020 Hb_012103_010--Hb_007223_020 Hb_012103_010--Hb_003238_010 Hb_004885_020 Hb_004885_020 Hb_012103_010--Hb_004885_020 Hb_003780_040 Hb_003780_040 Hb_012103_010--Hb_003780_040 Hb_176121_010 Hb_176121_010 Hb_000175_550--Hb_176121_010 Hb_003658_030 Hb_003658_030 Hb_000175_550--Hb_003658_030 Hb_000175_550--Hb_000701_070 Hb_000175_550--Hb_002367_120 Hb_005214_020 Hb_005214_020 Hb_000175_550--Hb_005214_020 Hb_104498_030 Hb_104498_030 Hb_000175_550--Hb_104498_030 Hb_111834_020--Hb_000407_060 Hb_012052_030 Hb_012052_030 Hb_111834_020--Hb_012052_030 Hb_000217_060 Hb_000217_060 Hb_111834_020--Hb_000217_060 Hb_010447_020 Hb_010447_020 Hb_111834_020--Hb_010447_020 Hb_065395_010 Hb_065395_010 Hb_111834_020--Hb_065395_010 Hb_147996_010 Hb_147996_010 Hb_003238_010--Hb_147996_010 Hb_003238_010--Hb_000407_060 Hb_000915_150 Hb_000915_150 Hb_003238_010--Hb_000915_150 Hb_003238_010--Hb_000175_550 Hb_000701_070--Hb_003658_030 Hb_123304_010 Hb_123304_010 Hb_000701_070--Hb_123304_010 Hb_000701_070--Hb_176121_010 Hb_000893_030 Hb_000893_030 Hb_000701_070--Hb_000893_030 Hb_000701_070--Hb_005214_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0148457 0.0339055 0 0 0.0392187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0106772 0

CAGE analysis