Hb_000249_090

Information

Type -
Description -
Location Contig249: 120057-124732
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04240g
description POPTRDRAFT_560432; patatin-related family protein
nr
ID XP_012085968.1
description PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
swissprot
ID Q9LZA6
description Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana GN=SDP1 PE=1 SV=1
trembl
ID B9H971
description Patatin-related family protein OS=Populus trichocarpa GN=POPTR_0006s04240g PE=4 SV=1
Gene Ontology
ID GO:0004806
description triacylglycerol lipase sdp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25888: 120060-120161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000249_090 0.0 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
2 Hb_027892_010 0.0864576892 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
3 Hb_000120_650 0.0881575923 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
4 Hb_013818_060 0.1409511448 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
5 Hb_004705_030 0.1449004094 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004048_050 0.1514051688 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
7 Hb_002685_090 0.1530894209 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
8 Hb_054865_130 0.1567034749 - - acyltransferase, putative [Ricinus communis]
9 Hb_000120_120 0.1570078199 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
10 Hb_001638_210 0.1590638401 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000003_840 0.1648037828 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
12 Hb_012725_110 0.1665862653 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
13 Hb_012573_030 0.1696139552 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000270_410 0.169716517 - - -
15 Hb_000249_130 0.1763739945 - - hypothetical protein RCOM_0254640 [Ricinus communis]
16 Hb_075449_050 0.1773820371 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
17 Hb_017124_020 0.179347969 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
18 Hb_171554_080 0.1825456272 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
19 Hb_143629_090 0.1867900592 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
20 Hb_009265_060 0.187344655 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]

Gene co-expression network

sample Hb_000249_090 Hb_000249_090 Hb_027892_010 Hb_027892_010 Hb_000249_090--Hb_027892_010 Hb_000120_650 Hb_000120_650 Hb_000249_090--Hb_000120_650 Hb_013818_060 Hb_013818_060 Hb_000249_090--Hb_013818_060 Hb_004705_030 Hb_004705_030 Hb_000249_090--Hb_004705_030 Hb_004048_050 Hb_004048_050 Hb_000249_090--Hb_004048_050 Hb_002685_090 Hb_002685_090 Hb_000249_090--Hb_002685_090 Hb_027892_010--Hb_000120_650 Hb_000120_120 Hb_000120_120 Hb_027892_010--Hb_000120_120 Hb_027892_010--Hb_004705_030 Hb_000249_130 Hb_000249_130 Hb_027892_010--Hb_000249_130 Hb_027892_010--Hb_013818_060 Hb_017124_020 Hb_017124_020 Hb_000120_650--Hb_017124_020 Hb_000120_650--Hb_002685_090 Hb_000120_650--Hb_013818_060 Hb_004871_050 Hb_004871_050 Hb_000120_650--Hb_004871_050 Hb_013818_060--Hb_000120_120 Hb_013818_060--Hb_000249_130 Hb_143629_090 Hb_143629_090 Hb_013818_060--Hb_143629_090 Hb_000548_040 Hb_000548_040 Hb_004705_030--Hb_000548_040 Hb_012725_110 Hb_012725_110 Hb_004705_030--Hb_012725_110 Hb_000699_120 Hb_000699_120 Hb_004705_030--Hb_000699_120 Hb_075449_050 Hb_075449_050 Hb_004705_030--Hb_075449_050 Hb_009265_060 Hb_009265_060 Hb_004048_050--Hb_009265_060 Hb_012573_030 Hb_012573_030 Hb_004048_050--Hb_012573_030 Hb_054865_130 Hb_054865_130 Hb_004048_050--Hb_054865_130 Hb_024714_060 Hb_024714_060 Hb_004048_050--Hb_024714_060 Hb_171554_080 Hb_171554_080 Hb_004048_050--Hb_171554_080 Hb_004048_050--Hb_012725_110 Hb_000270_410 Hb_000270_410 Hb_002685_090--Hb_000270_410 Hb_000041_070 Hb_000041_070 Hb_002685_090--Hb_000041_070 Hb_015934_020 Hb_015934_020 Hb_002685_090--Hb_015934_020 Hb_002685_090--Hb_012725_110 Hb_002387_060 Hb_002387_060 Hb_002685_090--Hb_002387_060 Hb_002936_050 Hb_002936_050 Hb_002685_090--Hb_002936_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4343 0.975693 0.615624 3.55239 8.65986 14.2208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.4023 22.9059 100.33 3.44923 1.43713

CAGE analysis