Hb_000249_110

Information

Type -
Description -
Location Contig249: 193832-197175
Sequence    

Annotation

kegg
ID brp:103847337
description kinesin-related protein 4
nr
ID KDP26216.1
description hypothetical protein JCGZ_22462 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22462 PE=4 SV=1
Gene Ontology
ID GO:0005516
description dna polymerase delta catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25889: 193762-194081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000249_110 0.0 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
2 Hb_027751_020 0.0713703532 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
3 Hb_002843_160 0.0833337957 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
4 Hb_002609_260 0.0842215447 - - CCCH-type zinc finger protein [Hevea brasiliensis]
5 Hb_004884_060 0.0890097292 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
6 Hb_003001_030 0.0906387647 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
7 Hb_003906_110 0.0917232629 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
8 Hb_014067_010 0.0947662572 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
9 Hb_000789_190 0.0950479321 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
10 Hb_002989_080 0.101061799 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
11 Hb_004126_010 0.1020658955 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
12 Hb_005730_020 0.1033178946 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
13 Hb_010931_100 0.1040104351 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
14 Hb_002232_180 0.1056144467 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
15 Hb_007178_010 0.1057521773 - - pseudo-hevein [Hevea brasiliensis]
16 Hb_000571_070 0.1063861411 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
17 Hb_001767_010 0.1080430352 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
18 Hb_009510_030 0.1093153185 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
19 Hb_002301_320 0.1139396625 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
20 Hb_000264_190 0.1144447923 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000249_110 Hb_000249_110 Hb_027751_020 Hb_027751_020 Hb_000249_110--Hb_027751_020 Hb_002843_160 Hb_002843_160 Hb_000249_110--Hb_002843_160 Hb_002609_260 Hb_002609_260 Hb_000249_110--Hb_002609_260 Hb_004884_060 Hb_004884_060 Hb_000249_110--Hb_004884_060 Hb_003001_030 Hb_003001_030 Hb_000249_110--Hb_003001_030 Hb_003906_110 Hb_003906_110 Hb_000249_110--Hb_003906_110 Hb_000571_070 Hb_000571_070 Hb_027751_020--Hb_000571_070 Hb_027751_020--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_027751_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_027751_020--Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_027751_020--Hb_000264_190 Hb_002989_080 Hb_002989_080 Hb_002843_160--Hb_002989_080 Hb_000789_190 Hb_000789_190 Hb_002843_160--Hb_000789_190 Hb_014067_010 Hb_014067_010 Hb_002843_160--Hb_014067_010 Hb_002843_160--Hb_004884_060 Hb_002843_160--Hb_003906_110 Hb_002609_260--Hb_000264_190 Hb_002609_260--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_002609_260--Hb_000563_540 Hb_004884_060--Hb_003906_110 Hb_000907_100 Hb_000907_100 Hb_004884_060--Hb_000907_100 Hb_004884_060--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_004884_060--Hb_007178_010 Hb_009510_030 Hb_009510_030 Hb_003001_030--Hb_009510_030 Hb_114684_020 Hb_114684_020 Hb_003001_030--Hb_114684_020 Hb_003001_030--Hb_005730_020 Hb_003001_030--Hb_002609_260 Hb_004126_010 Hb_004126_010 Hb_003001_030--Hb_004126_010 Hb_003906_120 Hb_003906_120 Hb_003906_110--Hb_003906_120 Hb_003906_110--Hb_010931_100 Hb_003906_110--Hb_007178_010 Hb_003906_110--Hb_002989_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.898 5.86552 0.755659 5.12992 120.275 121.659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.4291 56.8994 134.129 13.3085 2.33142

CAGE analysis