Hb_000249_130

Information

Type -
Description -
Location Contig249: 218666-221275
Sequence    

Annotation

kegg
ID rcu:RCOM_0254640
description hypothetical protein
nr
ID XP_002530082.1
description hypothetical protein RCOM_0254640 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVR3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0254640 PE=4 SV=1
Gene Ontology
ID GO:0005516
description dna polymerase delta catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25890: 218401-221461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000249_130 0.0 - - hypothetical protein RCOM_0254640 [Ricinus communis]
2 Hb_143629_090 0.1018566889 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
3 Hb_003030_080 0.103159664 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_003497_030 0.1107999495 - - ADP-ribosylation factor, putative [Ricinus communis]
5 Hb_024952_010 0.1168218695 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
6 Hb_001606_070 0.1210432304 - - fimbrin, putative [Ricinus communis]
7 Hb_000380_180 0.1261183133 - - kinase, putative [Ricinus communis]
8 Hb_001396_230 0.1279506057 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
9 Hb_004800_160 0.1296197328 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
10 Hb_000567_250 0.1297559519 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
11 Hb_002739_110 0.1304068664 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
12 Hb_013818_060 0.1349888601 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
13 Hb_027892_010 0.13653254 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
14 Hb_000260_060 0.1392757379 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
15 Hb_000120_120 0.142786585 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
16 Hb_000157_010 0.1439873602 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_004871_050 0.1469089116 - - hypothetical protein F383_22684 [Gossypium arboreum]
18 Hb_010589_040 0.1484786712 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002685_090 0.1497734674 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
20 Hb_001767_010 0.1515884796 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]

Gene co-expression network

sample Hb_000249_130 Hb_000249_130 Hb_143629_090 Hb_143629_090 Hb_000249_130--Hb_143629_090 Hb_003030_080 Hb_003030_080 Hb_000249_130--Hb_003030_080 Hb_003497_030 Hb_003497_030 Hb_000249_130--Hb_003497_030 Hb_024952_010 Hb_024952_010 Hb_000249_130--Hb_024952_010 Hb_001606_070 Hb_001606_070 Hb_000249_130--Hb_001606_070 Hb_000380_180 Hb_000380_180 Hb_000249_130--Hb_000380_180 Hb_004800_160 Hb_004800_160 Hb_143629_090--Hb_004800_160 Hb_152439_020 Hb_152439_020 Hb_143629_090--Hb_152439_020 Hb_001437_240 Hb_001437_240 Hb_143629_090--Hb_001437_240 Hb_143629_090--Hb_024952_010 Hb_003943_030 Hb_003943_030 Hb_143629_090--Hb_003943_030 Hb_003030_080--Hb_001606_070 Hb_001396_230 Hb_001396_230 Hb_003030_080--Hb_001396_230 Hb_003030_080--Hb_003497_030 Hb_000849_040 Hb_000849_040 Hb_003030_080--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_003030_080--Hb_005779_100 Hb_003497_030--Hb_000380_180 Hb_003497_030--Hb_001606_070 Hb_002357_040 Hb_002357_040 Hb_003497_030--Hb_002357_040 Hb_027751_020 Hb_027751_020 Hb_003497_030--Hb_027751_020 Hb_000260_060 Hb_000260_060 Hb_003497_030--Hb_000260_060 Hb_002835_170 Hb_002835_170 Hb_003497_030--Hb_002835_170 Hb_024952_010--Hb_001396_230 Hb_024952_010--Hb_001606_070 Hb_024952_010--Hb_005779_100 Hb_001153_220 Hb_001153_220 Hb_024952_010--Hb_001153_220 Hb_002352_010 Hb_002352_010 Hb_024952_010--Hb_002352_010 Hb_000861_040 Hb_000861_040 Hb_024952_010--Hb_000861_040 Hb_001606_070--Hb_000849_040 Hb_001606_070--Hb_005779_100 Hb_000427_110 Hb_000427_110 Hb_001606_070--Hb_000427_110 Hb_006787_040 Hb_006787_040 Hb_001606_070--Hb_006787_040 Hb_001606_070--Hb_000861_040 Hb_001767_010 Hb_001767_010 Hb_000380_180--Hb_001767_010 Hb_000427_030 Hb_000427_030 Hb_000380_180--Hb_000427_030 Hb_000380_180--Hb_000260_060 Hb_002739_110 Hb_002739_110 Hb_000380_180--Hb_002739_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.5983 2.655 0.969369 9.58776 66.5621 75.6689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.4967 75.7948 242.172 18.5107 2.76679

CAGE analysis