Hb_000250_060

Information

Type -
Description -
Location Contig250: 161779-165810
Sequence    

Annotation

kegg
ID rcu:RCOM_0172960
description hypothetical protein
nr
ID XP_012078761.1
description PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
swissprot
ID Q9ER88
description 28S ribosomal protein S29, mitochondrial OS=Mus musculus GN=Dap3 PE=2 SV=1
trembl
ID A0A067LBC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17368 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 28s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26186: 161806-165691
cDNA
(Sanger)
(ID:Location)		 035_G09.ab1: 161806-163041 , 043_I01.ab1: 161815-163055 , 048_B21.ab1: 161806-163118 , 053_J20.ab1: 161815-163081

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000250_060 0.0 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
2 Hb_001633_210 0.0493617974 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
3 Hb_005539_280 0.058916407 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
4 Hb_001726_020 0.060082326 - - PREDICTED: endophilin-A1 [Jatropha curcas]
5 Hb_000297_010 0.0643704407 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
6 Hb_010812_120 0.0651544846 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
7 Hb_002046_180 0.065594252 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
8 Hb_012490_070 0.0668806951 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002878_020 0.06832746 - - mitochondrial carrier protein, putative [Ricinus communis]
10 Hb_000069_420 0.070623527 - - Beclin-1, putative [Ricinus communis]
11 Hb_005779_060 0.0718784036 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
12 Hb_001314_070 0.0721218982 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000185_030 0.0738386495 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
14 Hb_002078_350 0.0748301602 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
15 Hb_007416_320 0.0754023715 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012019_010 0.077290524 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
17 Hb_000120_460 0.0781292827 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
18 Hb_058999_020 0.0798027017 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
19 Hb_001545_170 0.0800863389 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
20 Hb_011386_010 0.0803327461 - - mitochondrial carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000250_060 Hb_000250_060 Hb_001633_210 Hb_001633_210 Hb_000250_060--Hb_001633_210 Hb_005539_280 Hb_005539_280 Hb_000250_060--Hb_005539_280 Hb_001726_020 Hb_001726_020 Hb_000250_060--Hb_001726_020 Hb_000297_010 Hb_000297_010 Hb_000250_060--Hb_000297_010 Hb_010812_120 Hb_010812_120 Hb_000250_060--Hb_010812_120 Hb_002046_180 Hb_002046_180 Hb_000250_060--Hb_002046_180 Hb_000840_250 Hb_000840_250 Hb_001633_210--Hb_000840_250 Hb_001633_210--Hb_010812_120 Hb_000614_250 Hb_000614_250 Hb_001633_210--Hb_000614_250 Hb_000185_030 Hb_000185_030 Hb_001633_210--Hb_000185_030 Hb_001633_210--Hb_000297_010 Hb_005539_280--Hb_001726_020 Hb_000504_140 Hb_000504_140 Hb_005539_280--Hb_000504_140 Hb_058999_020 Hb_058999_020 Hb_005539_280--Hb_058999_020 Hb_001633_050 Hb_001633_050 Hb_005539_280--Hb_001633_050 Hb_005779_060 Hb_005779_060 Hb_005539_280--Hb_005779_060 Hb_001726_020--Hb_000504_140 Hb_001726_020--Hb_005779_060 Hb_000783_020 Hb_000783_020 Hb_001726_020--Hb_000783_020 Hb_000529_170 Hb_000529_170 Hb_001726_020--Hb_000529_170 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000297_010--Hb_000840_250 Hb_003349_090 Hb_003349_090 Hb_010812_120--Hb_003349_090 Hb_089032_030 Hb_089032_030 Hb_010812_120--Hb_089032_030 Hb_000016_160 Hb_000016_160 Hb_010812_120--Hb_000016_160 Hb_003994_260 Hb_003994_260 Hb_010812_120--Hb_003994_260 Hb_012019_010 Hb_012019_010 Hb_002046_180--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_002046_180--Hb_002110_150 Hb_002046_180--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_002046_180--Hb_000876_070 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_005463_100 Hb_005463_100 Hb_002046_180--Hb_005463_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6761 13.9582 10.4407 10.2655 11.4 13.0388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8527 24.225 22.4049 16.8524 11.8488

CAGE analysis