Hb_000250_080

Information

Type -
Description -
Location Contig250: 188074-199051
Sequence    

Annotation

kegg
ID mdm:103410947
description E3 ubiquitin-protein ligase listerin-like
nr
ID KJB20481.1
description hypothetical protein B456_003G1510001, partial [Gossypium raimondii]
swissprot
ID Q555H8
description E3 ubiquitin-protein ligase listerin OS=Dictyostelium discoideum GN=rnf160 PE=3 SV=1
trembl
ID A0A0D2QTV0
description Gossypium raimondii chromosome 3, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_003G1510001 PE=4 SV=1
Gene Ontology
ID GO:0005488
description e3 ubiquitin-protein ligase listerin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26189: 173753-188261 , PASA_asmbl_26190: 188431-190162 , PASA_asmbl_26191: 190375-196428 , PASA_asmbl_26192: 198575-198780
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000250_080 0.0 - - hypothetical protein B456_003G1510001, partial [Gossypium raimondii]
2 Hb_009421_030 0.1096102888 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
3 Hb_172256_010 0.1137675084 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_007348_040 0.1173784213 transcription factor TF Family: PHD hypothetical protein RCOM_1314010 [Ricinus communis]
5 Hb_001486_120 0.1197346999 - - PREDICTED: importin-5-like [Jatropha curcas]
6 Hb_006882_010 0.1355248275 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
7 Hb_001433_190 0.1365609399 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
8 Hb_005843_040 0.1423642804 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
9 Hb_000890_220 0.1423759133 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
10 Hb_002918_070 0.1438269093 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
11 Hb_006076_020 0.1459294497 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
12 Hb_000779_040 0.1476401625 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
13 Hb_002159_030 0.1477384803 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
14 Hb_000453_080 0.1502160461 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_002105_080 0.1515806805 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_004102_130 0.1525357455 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000136_150 0.1526461628 - - hypothetical protein VITISV_038366 [Vitis vinifera]
18 Hb_000250_070 0.1531106246 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
19 Hb_000365_060 0.1535027391 - - 5'->3' exoribonuclease, putative [Ricinus communis]
20 Hb_004531_090 0.1537248432 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]

Gene co-expression network

sample Hb_000250_080 Hb_000250_080 Hb_009421_030 Hb_009421_030 Hb_000250_080--Hb_009421_030 Hb_172256_010 Hb_172256_010 Hb_000250_080--Hb_172256_010 Hb_007348_040 Hb_007348_040 Hb_000250_080--Hb_007348_040 Hb_001486_120 Hb_001486_120 Hb_000250_080--Hb_001486_120 Hb_006882_010 Hb_006882_010 Hb_000250_080--Hb_006882_010 Hb_001433_190 Hb_001433_190 Hb_000250_080--Hb_001433_190 Hb_009421_030--Hb_001486_120 Hb_000291_120 Hb_000291_120 Hb_009421_030--Hb_000291_120 Hb_001582_030 Hb_001582_030 Hb_009421_030--Hb_001582_030 Hb_000367_290 Hb_000367_290 Hb_009421_030--Hb_000367_290 Hb_005295_040 Hb_005295_040 Hb_009421_030--Hb_005295_040 Hb_000152_890 Hb_000152_890 Hb_009421_030--Hb_000152_890 Hb_000211_080 Hb_000211_080 Hb_172256_010--Hb_000211_080 Hb_004102_130 Hb_004102_130 Hb_172256_010--Hb_004102_130 Hb_000779_040 Hb_000779_040 Hb_172256_010--Hb_000779_040 Hb_003673_020 Hb_003673_020 Hb_172256_010--Hb_003673_020 Hb_000890_220 Hb_000890_220 Hb_172256_010--Hb_000890_220 Hb_000016_180 Hb_000016_180 Hb_172256_010--Hb_000016_180 Hb_000453_080 Hb_000453_080 Hb_007348_040--Hb_000453_080 Hb_000136_150 Hb_000136_150 Hb_007348_040--Hb_000136_150 Hb_007348_040--Hb_001486_120 Hb_006816_410 Hb_006816_410 Hb_007348_040--Hb_006816_410 Hb_081879_030 Hb_081879_030 Hb_007348_040--Hb_081879_030 Hb_001486_120--Hb_000136_150 Hb_000134_360 Hb_000134_360 Hb_001486_120--Hb_000134_360 Hb_000805_310 Hb_000805_310 Hb_001486_120--Hb_000805_310 Hb_000317_440 Hb_000317_440 Hb_001486_120--Hb_000317_440 Hb_008528_010 Hb_008528_010 Hb_001486_120--Hb_008528_010 Hb_078477_040 Hb_078477_040 Hb_006882_010--Hb_078477_040 Hb_000329_490 Hb_000329_490 Hb_006882_010--Hb_000329_490 Hb_022250_110 Hb_022250_110 Hb_006882_010--Hb_022250_110 Hb_001901_080 Hb_001901_080 Hb_006882_010--Hb_001901_080 Hb_006002_030 Hb_006002_030 Hb_006882_010--Hb_006002_030 Hb_001196_060 Hb_001196_060 Hb_006882_010--Hb_001196_060 Hb_001278_060 Hb_001278_060 Hb_001433_190--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_001433_190--Hb_005129_050 Hb_002883_010 Hb_002883_010 Hb_001433_190--Hb_002883_010 Hb_007849_020 Hb_007849_020 Hb_001433_190--Hb_007849_020 Hb_001196_070 Hb_001196_070 Hb_001433_190--Hb_001196_070 Hb_001433_190--Hb_006002_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4543 5.92702 0.994394 1.28148 24.7874 24.2997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90646 1.01324 5.76272 6.00259 5.99461

CAGE analysis