Hb_000251_150

Information

Type -
Description -
Location Contig251: 178628-191654
Sequence    

Annotation

kegg
ID rcu:RCOM_0633900
description starch synthase, putative (EC:2.4.1.21)
nr
ID XP_012072082.1
description PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
swissprot
ID Q0WVX5
description Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS4 PE=2 SV=1
trembl
ID A0A067KNY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04589 PE=3 SV=1
Gene Ontology
ID GO:0009507
description probable starch synthase chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26250: 188286-191805 , PASA_asmbl_26252: 191379-191805
cDNA
(Sanger)
(ID:Location)		 001_D05.ab1: 190808-191557 , 002_M02.ab1: 190808-191596 , 003_D24.ab1: 191000-191748 , 013_L22.ab1: 190808-191552 , 016_L03.ab1: 191000-191748 , 023_H22.ab1: 191167-191818 , 025_D02.ab1: 190808-191604 , 028_N03.ab1: 191167-191818 , 028_N24r.ab1: 188296-188971 , 031_H10.ab1: 190808-191491 , 032_B02.ab1: 190808-191484 , 033_E03.ab1: 190808-191597 , 040_E18r.ab1: 188286-189051 , 041_I16.ab1: 190798-191526 , 042_H23.ab1: 190808-191488 , 046_C10.ab1: 190808-191631 , 046_L12.ab1: 190808-191597 , 048_N23.ab1: 191167-191818 , 051_O16.ab1: 190808-191450

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_150 0.0 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
2 Hb_000987_030 0.0281547782 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
3 Hb_000046_400 0.0389992745 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005743_050 0.0398368305 - - unnamed protein product [Coffea canephora]
5 Hb_029879_020 0.0415763696 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
6 Hb_000179_010 0.0444614401 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
7 Hb_004452_070 0.0455377866 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
8 Hb_000979_120 0.0461057374 - - Pectinesterase-1 precursor, putative [Ricinus communis]
9 Hb_001049_130 0.0476275525 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
10 Hb_158001_010 0.0489036747 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
11 Hb_031862_220 0.0506605927 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
12 Hb_007317_030 0.0515796684 - - -
13 Hb_001053_070 0.052299453 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
14 Hb_003186_030 0.0530064879 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
15 Hb_006132_080 0.0600211391 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
16 Hb_001936_100 0.0601065729 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000139_170 0.0610775895 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
18 Hb_001295_070 0.067292499 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
19 Hb_000373_210 0.0676466966 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
20 Hb_004899_190 0.0679978098 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]

Gene co-expression network

sample Hb_000251_150 Hb_000251_150 Hb_000987_030 Hb_000987_030 Hb_000251_150--Hb_000987_030 Hb_000046_400 Hb_000046_400 Hb_000251_150--Hb_000046_400 Hb_005743_050 Hb_005743_050 Hb_000251_150--Hb_005743_050 Hb_029879_020 Hb_029879_020 Hb_000251_150--Hb_029879_020 Hb_000179_010 Hb_000179_010 Hb_000251_150--Hb_000179_010 Hb_004452_070 Hb_004452_070 Hb_000251_150--Hb_004452_070 Hb_000987_030--Hb_005743_050 Hb_158001_010 Hb_158001_010 Hb_000987_030--Hb_158001_010 Hb_001049_130 Hb_001049_130 Hb_000987_030--Hb_001049_130 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120 Hb_031862_220 Hb_031862_220 Hb_000987_030--Hb_031862_220 Hb_000046_400--Hb_029879_020 Hb_007317_030 Hb_007317_030 Hb_000046_400--Hb_007317_030 Hb_000046_400--Hb_000179_010 Hb_000046_400--Hb_000987_030 Hb_000046_400--Hb_158001_010 Hb_000139_170 Hb_000139_170 Hb_005743_050--Hb_000139_170 Hb_001775_020 Hb_001775_020 Hb_005743_050--Hb_001775_020 Hb_001295_070 Hb_001295_070 Hb_005743_050--Hb_001295_070 Hb_005743_050--Hb_158001_010 Hb_029879_020--Hb_007317_030 Hb_029879_020--Hb_000987_030 Hb_154064_010 Hb_154064_010 Hb_029879_020--Hb_154064_010 Hb_065774_010 Hb_065774_010 Hb_029879_020--Hb_065774_010 Hb_004837_010 Hb_004837_010 Hb_000179_010--Hb_004837_010 Hb_001307_050 Hb_001307_050 Hb_000179_010--Hb_001307_050 Hb_000179_010--Hb_158001_010 Hb_029991_010 Hb_029991_010 Hb_000179_010--Hb_029991_010 Hb_003186_030 Hb_003186_030 Hb_004452_070--Hb_003186_030 Hb_006132_080 Hb_006132_080 Hb_004452_070--Hb_006132_080 Hb_001936_100 Hb_001936_100 Hb_004452_070--Hb_001936_100 Hb_004452_070--Hb_001049_130 Hb_000703_340 Hb_000703_340 Hb_004452_070--Hb_000703_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.37519 420.363 296.691 0 0.11569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0319553 0.0419132 0 1.01257 976.477

CAGE analysis