Hb_000251_160

Information

Type -
Description -
Location Contig251: 188395-189192
Sequence    

Annotation

kegg
ID rcu:RCOM_0633890
description chlorophyll A/B binding protein, putative
nr
ID XP_002519724.1
description chlorophyll A/B binding protein, putative [Ricinus communis]
swissprot
ID P27493
description Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1
trembl
ID B9S155
description Chlorophyll A/B binding protein, putative OS=Ricinus communis GN=RCOM_0633890 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chlorophyll a-b binding protein of lhcii type 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26251: 188183-189245
cDNA
(Sanger)
(ID:Location)		 009_E17.ab1: 188490-189245 , 018_D04.ab1: 188428-189234 , 020_P01.ab1: 188487-189245 , 021_H04.ab1: 188494-189245 , 027_J07.ab1: 188585-189245 , 028_N24.ab1: 188463-189246 , 031_E23.ab1: 188515-189245 , 031_K03.ab1: 188486-189245 , 036_M19.ab1: 188286-188848 , 040_E18.ab1: 188442-189245 , 041_K08.ab1: 188485-189245 , 046_I05.ab1: 188493-189246 , 049_F02.ab1: 188491-189245 , 052_N23.ab1: 188503-189245

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_160 0.0 - - chlorophyll A/B binding protein, putative [Ricinus communis]
2 Hb_004129_170 0.0248138801 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
3 Hb_086022_020 0.0331451407 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
4 Hb_002374_480 0.0358748313 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_153106_010 0.0382826279 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
6 Hb_180007_010 0.0394295487 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_132840_050 0.0451927806 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
8 Hb_000825_010 0.0481197514 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
9 Hb_000923_030 0.0531163154 - - F-box family protein [Populus trichocarpa]
10 Hb_000373_210 0.0596560103 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
11 Hb_001269_480 0.0601842187 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
12 Hb_001348_160 0.0602420414 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_005483_050 0.0608199623 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008748_050 0.0611631053 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
15 Hb_005375_090 0.0618373726 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
16 Hb_003747_090 0.0628370407 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001104_080 0.0630594139 - - peroxiredoxin, putative [Ricinus communis]
18 Hb_002400_200 0.0644550571 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
19 Hb_001191_060 0.064483046 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
20 Hb_002818_130 0.0658599508 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000251_160 Hb_000251_160 Hb_004129_170 Hb_004129_170 Hb_000251_160--Hb_004129_170 Hb_086022_020 Hb_086022_020 Hb_000251_160--Hb_086022_020 Hb_002374_480 Hb_002374_480 Hb_000251_160--Hb_002374_480 Hb_153106_010 Hb_153106_010 Hb_000251_160--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_000251_160--Hb_180007_010 Hb_132840_050 Hb_132840_050 Hb_000251_160--Hb_132840_050 Hb_004129_170--Hb_002374_480 Hb_004129_170--Hb_086022_020 Hb_004129_170--Hb_153106_010 Hb_004129_170--Hb_180007_010 Hb_003747_090 Hb_003747_090 Hb_004129_170--Hb_003747_090 Hb_008748_050 Hb_008748_050 Hb_086022_020--Hb_008748_050 Hb_002785_040 Hb_002785_040 Hb_086022_020--Hb_002785_040 Hb_086022_020--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_086022_020--Hb_005375_090 Hb_002374_480--Hb_180007_010 Hb_002374_480--Hb_153106_010 Hb_000373_210 Hb_000373_210 Hb_002374_480--Hb_000373_210 Hb_002400_200 Hb_002400_200 Hb_002374_480--Hb_002400_200 Hb_153106_010--Hb_180007_010 Hb_153106_010--Hb_132840_050 Hb_002890_170 Hb_002890_170 Hb_153106_010--Hb_002890_170 Hb_180007_010--Hb_132840_050 Hb_180007_010--Hb_000373_210 Hb_000243_190 Hb_000243_190 Hb_132840_050--Hb_000243_190 Hb_016334_010 Hb_016334_010 Hb_132840_050--Hb_016334_010 Hb_000825_010 Hb_000825_010 Hb_132840_050--Hb_000825_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 24.9519 2532.34 1022.23 0 0.428257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.947953 0.798612 0 3.27586 7093.18

CAGE analysis