Hb_000251_170

Information

Type -
Description -
Location Contig251: 192318-196048
Sequence    

Annotation

kegg
ID rcu:RCOM_0633880
description leucine-rich repeat transmembrane protein kinase, putative (EC:1.3.1.74)
nr
ID XP_002519723.1
description leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
swissprot
ID Q9FL28
description LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1
trembl
ID B9S154
description Leucine-rich repeat transmembrane protein kinase, putative OS=Ricinus communis GN=RCOM_0633880 PE=4 SV=1
Gene Ontology
ID GO:0016301
description lrr receptor-like serine threonine-protein kinase fls2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_170 0.0 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
2 Hb_014700_020 0.0723973692 - - tryptophan synthase beta chain, putative [Ricinus communis]
3 Hb_007919_070 0.087763623 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
4 Hb_002999_150 0.1295986821 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
5 Hb_155896_010 0.1297408023 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
6 Hb_003207_220 0.1302016641 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
7 Hb_009421_090 0.1323098733 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
8 Hb_071654_010 0.1376296734 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
9 Hb_012400_020 0.1380755918 - - Spotted leaf protein, putative [Ricinus communis]
10 Hb_000866_430 0.1417292988 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
11 Hb_007894_040 0.142045996 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
12 Hb_116420_050 0.1426607255 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
13 Hb_012146_010 0.142781561 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
14 Hb_009252_090 0.1428561204 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_107174_010 0.1445365209 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_004551_010 0.1454529271 - - tryptophan synthase beta chain, putative [Ricinus communis]
17 Hb_127372_010 0.1456834139 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
18 Hb_000856_230 0.1469776139 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
19 Hb_002267_010 0.1475597296 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
20 Hb_027065_010 0.14959721 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]

Gene co-expression network

sample Hb_000251_170 Hb_000251_170 Hb_014700_020 Hb_014700_020 Hb_000251_170--Hb_014700_020 Hb_007919_070 Hb_007919_070 Hb_000251_170--Hb_007919_070 Hb_002999_150 Hb_002999_150 Hb_000251_170--Hb_002999_150 Hb_155896_010 Hb_155896_010 Hb_000251_170--Hb_155896_010 Hb_003207_220 Hb_003207_220 Hb_000251_170--Hb_003207_220 Hb_009421_090 Hb_009421_090 Hb_000251_170--Hb_009421_090 Hb_014700_020--Hb_009421_090 Hb_000856_230 Hb_000856_230 Hb_014700_020--Hb_000856_230 Hb_014700_020--Hb_007919_070 Hb_115962_010 Hb_115962_010 Hb_014700_020--Hb_115962_010 Hb_000371_030 Hb_000371_030 Hb_014700_020--Hb_000371_030 Hb_000866_430 Hb_000866_430 Hb_007919_070--Hb_000866_430 Hb_003935_050 Hb_003935_050 Hb_007919_070--Hb_003935_050 Hb_116420_050 Hb_116420_050 Hb_007919_070--Hb_116420_050 Hb_000349_170 Hb_000349_170 Hb_007919_070--Hb_000349_170 Hb_002999_150--Hb_003207_220 Hb_107174_010 Hb_107174_010 Hb_002999_150--Hb_107174_010 Hb_052764_120 Hb_052764_120 Hb_002999_150--Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_002999_150--Hb_002267_010 Hb_071654_010 Hb_071654_010 Hb_002999_150--Hb_071654_010 Hb_007894_040 Hb_007894_040 Hb_002999_150--Hb_007894_040 Hb_000069_530 Hb_000069_530 Hb_155896_010--Hb_000069_530 Hb_005381_010 Hb_005381_010 Hb_155896_010--Hb_005381_010 Hb_006615_060 Hb_006615_060 Hb_155896_010--Hb_006615_060 Hb_077694_010 Hb_077694_010 Hb_155896_010--Hb_077694_010 Hb_127372_010 Hb_127372_010 Hb_155896_010--Hb_127372_010 Hb_003207_220--Hb_052764_120 Hb_002435_010 Hb_002435_010 Hb_003207_220--Hb_002435_010 Hb_003207_220--Hb_002267_010 Hb_003207_220--Hb_107174_010 Hb_010578_020 Hb_010578_020 Hb_003207_220--Hb_010578_020 Hb_009421_090--Hb_000856_230 Hb_000200_270 Hb_000200_270 Hb_009421_090--Hb_000200_270 Hb_009421_090--Hb_115962_010 Hb_003767_030 Hb_003767_030 Hb_009421_090--Hb_003767_030 Hb_003207_210 Hb_003207_210 Hb_009421_090--Hb_003207_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.186378 0.528511 0.0915174 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0254711

CAGE analysis