Hb_000252_040

Information

Type -
Description -
Location Contig252: 37115-40967
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05430g
description POPTRDRAFT_769113; hypothetical protein
nr
ID XP_011045276.1
description PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HTV1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s05430g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26352: 36516-36903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_040 0.0 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
2 Hb_001191_100 0.0810261588 - - F-actin capping protein beta subunit [Populus trichocarpa]
3 Hb_001366_230 0.1007630751 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005000_290 0.1032527314 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
5 Hb_183963_020 0.1107371233 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
6 Hb_000291_200 0.11347296 - - -
7 Hb_000787_070 0.1148803282 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
8 Hb_065500_050 0.1165358032 - - lipoate-protein ligase B, putative [Ricinus communis]
9 Hb_001102_010 0.116546005 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
10 Hb_005348_080 0.1211394018 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
11 Hb_006787_040 0.1216687582 - - polyadenylate-binding protein, putative [Ricinus communis]
12 Hb_001104_120 0.12364447 - - -
13 Hb_000111_280 0.1247767323 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
14 Hb_000427_110 0.1249956595 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
15 Hb_001621_180 0.1261098697 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
16 Hb_000061_160 0.1274644806 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
17 Hb_025087_010 0.128442964 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
18 Hb_000173_170 0.1295714553 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
19 Hb_024650_020 0.1320303291 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
20 Hb_000193_230 0.1322625616 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000252_040 Hb_000252_040 Hb_001191_100 Hb_001191_100 Hb_000252_040--Hb_001191_100 Hb_001366_230 Hb_001366_230 Hb_000252_040--Hb_001366_230 Hb_005000_290 Hb_005000_290 Hb_000252_040--Hb_005000_290 Hb_183963_020 Hb_183963_020 Hb_000252_040--Hb_183963_020 Hb_000291_200 Hb_000291_200 Hb_000252_040--Hb_000291_200 Hb_000787_070 Hb_000787_070 Hb_000252_040--Hb_000787_070 Hb_001191_100--Hb_001366_230 Hb_000173_170 Hb_000173_170 Hb_001191_100--Hb_000173_170 Hb_065500_050 Hb_065500_050 Hb_001191_100--Hb_065500_050 Hb_000427_110 Hb_000427_110 Hb_001191_100--Hb_000427_110 Hb_001366_220 Hb_001366_220 Hb_001191_100--Hb_001366_220 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_001366_230--Hb_183963_020 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_015934_020 Hb_015934_020 Hb_005000_290--Hb_015934_020 Hb_005000_290--Hb_025087_010 Hb_005000_290--Hb_183963_020 Hb_007229_060 Hb_007229_060 Hb_005000_290--Hb_007229_060 Hb_000329_600 Hb_000329_600 Hb_005000_290--Hb_000329_600 Hb_002307_090 Hb_002307_090 Hb_005000_290--Hb_002307_090 Hb_183963_020--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_001722_040 Hb_001722_040 Hb_183963_020--Hb_001722_040 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060 Hb_005348_080 Hb_005348_080 Hb_000291_200--Hb_005348_080 Hb_002662_100 Hb_002662_100 Hb_000291_200--Hb_002662_100 Hb_102864_010 Hb_102864_010 Hb_000291_200--Hb_102864_010 Hb_000291_200--Hb_001366_230 Hb_008016_010 Hb_008016_010 Hb_000291_200--Hb_008016_010 Hb_005016_130 Hb_005016_130 Hb_000787_070--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_000787_070--Hb_115919_020 Hb_006132_060 Hb_006132_060 Hb_000787_070--Hb_006132_060 Hb_001102_010 Hb_001102_010 Hb_000787_070--Hb_001102_010 Hb_024505_040 Hb_024505_040 Hb_000787_070--Hb_024505_040 Hb_000078_030 Hb_000078_030 Hb_000787_070--Hb_000078_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.0832 0.435692 2.55053 2.62936 29.2895 29.6748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.5678 42.2791 33.356 2.59774 3.02126

CAGE analysis