Hb_000252_050

Information

Type -
Description -
Location Contig252: 48197-51143
Sequence    

Annotation

kegg
ID rcu:RCOM_0024330
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085455.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
swissprot
ID O22714
description Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
trembl
ID A0A067K311
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17793 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g60770-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26354: 48294-50994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
2 Hb_021374_010 0.0708286047 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
3 Hb_000227_220 0.0708335154 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
4 Hb_011231_020 0.0708958342 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
5 Hb_000027_050 0.0731858837 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
6 Hb_012760_100 0.0747477464 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
7 Hb_003943_010 0.0751882833 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001268_280 0.0761932081 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000780_190 0.0769062334 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
10 Hb_000890_060 0.0775128515 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
11 Hb_028872_070 0.0788397576 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
12 Hb_000008_290 0.0799315609 - - PREDICTED: protein SAND [Jatropha curcas]
13 Hb_009976_020 0.0811904828 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
14 Hb_102698_010 0.0812476666 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
15 Hb_004109_370 0.0817902987 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_000879_040 0.0820147475 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
17 Hb_012215_010 0.082297016 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
18 Hb_007441_130 0.0825301538 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_015978_100 0.082544581 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
20 Hb_001442_060 0.0834666646 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000252_050 Hb_000252_050 Hb_021374_010 Hb_021374_010 Hb_000252_050--Hb_021374_010 Hb_000227_220 Hb_000227_220 Hb_000252_050--Hb_000227_220 Hb_011231_020 Hb_011231_020 Hb_000252_050--Hb_011231_020 Hb_000027_050 Hb_000027_050 Hb_000252_050--Hb_000027_050 Hb_012760_100 Hb_012760_100 Hb_000252_050--Hb_012760_100 Hb_003943_010 Hb_003943_010 Hb_000252_050--Hb_003943_010 Hb_004020_040 Hb_004020_040 Hb_021374_010--Hb_004020_040 Hb_021374_010--Hb_000227_220 Hb_000170_090 Hb_000170_090 Hb_021374_010--Hb_000170_090 Hb_021374_010--Hb_003943_010 Hb_001377_310 Hb_001377_310 Hb_021374_010--Hb_001377_310 Hb_001089_030 Hb_001089_030 Hb_021374_010--Hb_001089_030 Hb_009976_020 Hb_009976_020 Hb_000227_220--Hb_009976_020 Hb_001814_030 Hb_001814_030 Hb_000227_220--Hb_001814_030 Hb_000710_040 Hb_000710_040 Hb_000227_220--Hb_000710_040 Hb_000227_220--Hb_003943_010 Hb_000227_220--Hb_001089_030 Hb_000227_220--Hb_004020_040 Hb_001655_030 Hb_001655_030 Hb_011231_020--Hb_001655_030 Hb_011231_020--Hb_009976_020 Hb_011231_020--Hb_001814_030 Hb_002890_130 Hb_002890_130 Hb_011231_020--Hb_002890_130 Hb_003734_010 Hb_003734_010 Hb_011231_020--Hb_003734_010 Hb_008484_060 Hb_008484_060 Hb_011231_020--Hb_008484_060 Hb_000879_040 Hb_000879_040 Hb_000027_050--Hb_000879_040 Hb_001723_140 Hb_001723_140 Hb_000027_050--Hb_001723_140 Hb_000027_050--Hb_003943_010 Hb_001935_160 Hb_001935_160 Hb_000027_050--Hb_001935_160 Hb_001268_280 Hb_001268_280 Hb_000027_050--Hb_001268_280 Hb_012760_100--Hb_009976_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_001377_160 Hb_001377_160 Hb_003943_010--Hb_001377_160 Hb_001946_340 Hb_001946_340 Hb_003943_010--Hb_001946_340 Hb_000398_080 Hb_000398_080 Hb_003943_010--Hb_000398_080 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.43521 5.556 4.84031 6.02887 5.07677 7.03933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1909 2.92501 2.86189 6.48561 7.24397

CAGE analysis