Hb_000252_090

Information

Type -
Description -
Location Contig252: 67897-77013
Sequence    

Annotation

kegg
ID rcu:RCOM_0024350
description Alliin lyase precursor, putative (EC:4.4.1.4)
nr
ID XP_012085457.1
description PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
swissprot
ID Q9S7N2
description L-tryptophan--pyruvate aminotransferase 1 OS=Arabidopsis thaliana GN=TAA1 PE=1 SV=1
trembl
ID A0A067JRW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17795 PE=4 SV=1
Gene Ontology
ID GO:0016846
description l-tryptophan--pyruvate aminotransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26358: 73827-77236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_090 0.0 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
2 Hb_001138_010 0.110697654 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001916_120 0.1481868961 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
4 Hb_000329_540 0.1566876143 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
5 Hb_000329_420 0.1673969224 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
6 Hb_000156_030 0.1679522495 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000441_230 0.1680446761 - - unnamed protein product [Coffea canephora]
8 Hb_000056_120 0.1736793208 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
9 Hb_003540_140 0.174410434 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
10 Hb_000005_320 0.1809145274 - - conserved hypothetical protein [Ricinus communis]
11 Hb_061256_030 0.1902687227 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
12 Hb_006960_030 0.1910894687 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
13 Hb_004545_050 0.1942861936 - - Cu/Zn superoxide dismutase [Hevea brasiliensis]
14 Hb_001935_190 0.1959608986 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
15 Hb_171554_020 0.1981670868 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
16 Hb_000215_260 0.198380255 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
17 Hb_002234_220 0.1997896482 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
18 Hb_010189_010 0.2007941423 - - -
19 Hb_001741_100 0.2009326481 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
20 Hb_003673_020 0.201953415 - - hypothetical protein JCGZ_20998 [Jatropha curcas]

Gene co-expression network

sample Hb_000252_090 Hb_000252_090 Hb_001138_010 Hb_001138_010 Hb_000252_090--Hb_001138_010 Hb_001916_120 Hb_001916_120 Hb_000252_090--Hb_001916_120 Hb_000329_540 Hb_000329_540 Hb_000252_090--Hb_000329_540 Hb_000329_420 Hb_000329_420 Hb_000252_090--Hb_000329_420 Hb_000156_030 Hb_000156_030 Hb_000252_090--Hb_000156_030 Hb_000441_230 Hb_000441_230 Hb_000252_090--Hb_000441_230 Hb_001138_010--Hb_001916_120 Hb_000605_010 Hb_000605_010 Hb_001138_010--Hb_000605_010 Hb_001677_050 Hb_001677_050 Hb_001138_010--Hb_001677_050 Hb_001138_010--Hb_000156_030 Hb_003540_140 Hb_003540_140 Hb_001138_010--Hb_003540_140 Hb_001277_410 Hb_001277_410 Hb_001916_120--Hb_001277_410 Hb_000365_260 Hb_000365_260 Hb_001916_120--Hb_000365_260 Hb_004324_240 Hb_004324_240 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_000329_540--Hb_000441_230 Hb_000329_540--Hb_003540_140 Hb_000329_540--Hb_000156_030 Hb_005568_070 Hb_005568_070 Hb_000329_540--Hb_005568_070 Hb_000175_530 Hb_000175_530 Hb_000329_540--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_000329_540--Hb_000580_060 Hb_000215_260 Hb_000215_260 Hb_000329_420--Hb_000215_260 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000056_230 Hb_000056_230 Hb_000329_420--Hb_000056_230 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030 Hb_000156_030--Hb_003540_140 Hb_000161_100 Hb_000161_100 Hb_000156_030--Hb_000161_100 Hb_004032_460 Hb_004032_460 Hb_000156_030--Hb_004032_460 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_000441_230--Hb_003540_140 Hb_002506_110 Hb_002506_110 Hb_000441_230--Hb_002506_110 Hb_003226_170 Hb_003226_170 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_000441_230--Hb_000580_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.96658 0.393843 0.784792 1.63438 5.4571 7.68539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.952754 0.390461 0.26734 0.0558655 0.529814

CAGE analysis