Hb_000252_130

Information

Type -
Description -
Location Contig252: 105509-108124
Sequence    

Annotation

kegg
ID pop:POPTR_0011s17240g
description hypothetical protein
nr
ID XP_006378015.1
description hypothetical protein POPTR_0011s17240g, partial [Populus trichocarpa]
swissprot
ID Q9ZWC8
description Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1
trembl
ID U5G2X6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s17240g PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein kinase bri1-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26361: 106636-107008
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_130 0.0 - - hypothetical protein POPTR_0011s17240g, partial [Populus trichocarpa]
2 Hb_002820_010 0.1238420367 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
3 Hb_000723_190 0.1449074946 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
4 Hb_003642_050 0.1606952768 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
5 Hb_005224_010 0.16850574 - - glycine-rich protein [Bruguiera gymnorhiza]
6 Hb_000116_420 0.175827449 - - PREDICTED: monosaccharide-sensing protein 2-like [Jatropha curcas]
7 Hb_001894_170 0.1784519849 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
8 Hb_002286_010 0.1806739743 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
9 Hb_029510_040 0.1868556222 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
10 Hb_001357_010 0.1879263352 - - -
11 Hb_000125_030 0.1882074087 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
12 Hb_017434_050 0.1911205537 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
13 Hb_004414_050 0.1920969931 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000196_080 0.1930403767 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
15 Hb_001102_210 0.1979440728 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
16 Hb_002239_060 0.1994516767 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
17 Hb_001846_070 0.1994713564 - - PREDICTED: fructokinase-1 [Jatropha curcas]
18 Hb_009314_010 0.1999337524 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
19 Hb_002205_130 0.2001867905 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
20 Hb_001159_080 0.2025786025 - - hypothetical protein JCGZ_20745 [Jatropha curcas]

Gene co-expression network

sample Hb_000252_130 Hb_000252_130 Hb_002820_010 Hb_002820_010 Hb_000252_130--Hb_002820_010 Hb_000723_190 Hb_000723_190 Hb_000252_130--Hb_000723_190 Hb_003642_050 Hb_003642_050 Hb_000252_130--Hb_003642_050 Hb_005224_010 Hb_005224_010 Hb_000252_130--Hb_005224_010 Hb_000116_420 Hb_000116_420 Hb_000252_130--Hb_000116_420 Hb_001894_170 Hb_001894_170 Hb_000252_130--Hb_001894_170 Hb_002820_010--Hb_003642_050 Hb_008931_010 Hb_008931_010 Hb_002820_010--Hb_008931_010 Hb_002820_010--Hb_000723_190 Hb_001846_070 Hb_001846_070 Hb_002820_010--Hb_001846_070 Hb_002374_120 Hb_002374_120 Hb_002820_010--Hb_002374_120 Hb_000723_190--Hb_001894_170 Hb_002759_240 Hb_002759_240 Hb_000723_190--Hb_002759_240 Hb_002182_090 Hb_002182_090 Hb_000723_190--Hb_002182_090 Hb_005539_240 Hb_005539_240 Hb_000723_190--Hb_005539_240 Hb_000432_050 Hb_000432_050 Hb_000723_190--Hb_000432_050 Hb_000125_030 Hb_000125_030 Hb_003642_050--Hb_000125_030 Hb_003581_260 Hb_003581_260 Hb_003642_050--Hb_003581_260 Hb_003504_020 Hb_003504_020 Hb_003642_050--Hb_003504_020 Hb_001159_080 Hb_001159_080 Hb_003642_050--Hb_001159_080 Hb_012799_100 Hb_012799_100 Hb_003642_050--Hb_012799_100 Hb_001096_110 Hb_001096_110 Hb_003642_050--Hb_001096_110 Hb_000327_220 Hb_000327_220 Hb_005224_010--Hb_000327_220 Hb_002239_060 Hb_002239_060 Hb_005224_010--Hb_002239_060 Hb_005224_010--Hb_001159_080 Hb_005489_100 Hb_005489_100 Hb_005224_010--Hb_005489_100 Hb_003972_080 Hb_003972_080 Hb_005224_010--Hb_003972_080 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_000454_070 Hb_000454_070 Hb_000116_420--Hb_000454_070 Hb_029888_010 Hb_029888_010 Hb_000116_420--Hb_029888_010 Hb_003750_030 Hb_003750_030 Hb_000116_420--Hb_003750_030 Hb_165071_030 Hb_165071_030 Hb_000116_420--Hb_165071_030 Hb_000116_430 Hb_000116_430 Hb_000116_420--Hb_000116_430 Hb_001894_170--Hb_002759_240 Hb_017434_050 Hb_017434_050 Hb_001894_170--Hb_017434_050 Hb_000264_020 Hb_000264_020 Hb_001894_170--Hb_000264_020 Hb_000373_180 Hb_000373_180 Hb_001894_170--Hb_000373_180 Hb_006594_020 Hb_006594_020 Hb_001894_170--Hb_006594_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.266165 0.0672151 0.0338208 0.0581415 0.02178 0.0328598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.218675 0.463277 0.580908 0.257474 0.14082

CAGE analysis