Hb_000252_150

Information

Type -
Description -
Location Contig252: 117596-125962
Sequence    

Annotation

kegg
ID rcu:RCOM_0024520
description hypothetical protein
nr
ID XP_002527914.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0024520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26362: 117532-118368 , PASA_asmbl_26363: 118425-125706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003747_220 0.0812662 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
3 Hb_001143_130 0.0902167398 - - peroxidase 2 [Hevea brasiliensis]
4 Hb_000529_020 0.1063471529 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
5 Hb_007590_050 0.1157013987 - - NudC domain-containing protein, putative [Ricinus communis]
6 Hb_000179_070 0.1178237939 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
7 Hb_005928_110 0.1181472068 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
8 Hb_000120_330 0.1208755616 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000796_210 0.1223437552 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004586_140 0.1248303421 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
11 Hb_000220_040 0.1258242906 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001534_050 0.1260729304 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
13 Hb_000462_130 0.1265895108 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
14 Hb_000109_160 0.1287209711 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
15 Hb_000060_040 0.1305290221 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
16 Hb_002486_040 0.1307570634 - - -
17 Hb_000144_100 0.1308396416 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
18 Hb_112798_020 0.1311288387 - - dnajc14 protein, putative [Ricinus communis]
19 Hb_005306_190 0.1329237152 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
20 Hb_028487_020 0.1334160944 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]

Gene co-expression network

sample Hb_000252_150 Hb_000252_150 Hb_003747_220 Hb_003747_220 Hb_000252_150--Hb_003747_220 Hb_001143_130 Hb_001143_130 Hb_000252_150--Hb_001143_130 Hb_000529_020 Hb_000529_020 Hb_000252_150--Hb_000529_020 Hb_007590_050 Hb_007590_050 Hb_000252_150--Hb_007590_050 Hb_000179_070 Hb_000179_070 Hb_000252_150--Hb_000179_070 Hb_005928_110 Hb_005928_110 Hb_000252_150--Hb_005928_110 Hb_003747_220--Hb_001143_130 Hb_000635_180 Hb_000635_180 Hb_003747_220--Hb_000635_180 Hb_000462_130 Hb_000462_130 Hb_003747_220--Hb_000462_130 Hb_003747_220--Hb_000179_070 Hb_004586_140 Hb_004586_140 Hb_003747_220--Hb_004586_140 Hb_001143_130--Hb_007590_050 Hb_000905_060 Hb_000905_060 Hb_001143_130--Hb_000905_060 Hb_000120_330 Hb_000120_330 Hb_001143_130--Hb_000120_330 Hb_024071_020 Hb_024071_020 Hb_001143_130--Hb_024071_020 Hb_112798_020 Hb_112798_020 Hb_000529_020--Hb_112798_020 Hb_002248_080 Hb_002248_080 Hb_000529_020--Hb_002248_080 Hb_000008_330 Hb_000008_330 Hb_000529_020--Hb_000008_330 Hb_000109_160 Hb_000109_160 Hb_000529_020--Hb_000109_160 Hb_004724_320 Hb_004724_320 Hb_000529_020--Hb_004724_320 Hb_000529_020--Hb_007590_050 Hb_005357_030 Hb_005357_030 Hb_007590_050--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_007590_050--Hb_002685_170 Hb_007590_050--Hb_000109_160 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_020956_020 Hb_020956_020 Hb_007590_050--Hb_020956_020 Hb_003126_080 Hb_003126_080 Hb_007590_050--Hb_003126_080 Hb_000179_070--Hb_004586_140 Hb_006816_350 Hb_006816_350 Hb_000179_070--Hb_006816_350 Hb_003020_270 Hb_003020_270 Hb_000179_070--Hb_003020_270 Hb_000661_290 Hb_000661_290 Hb_000179_070--Hb_000661_290 Hb_095296_010 Hb_095296_010 Hb_000179_070--Hb_095296_010 Hb_000696_090 Hb_000696_090 Hb_000179_070--Hb_000696_090 Hb_005928_110--Hb_000109_160 Hb_009615_150 Hb_009615_150 Hb_005928_110--Hb_009615_150 Hb_001610_110 Hb_001610_110 Hb_005928_110--Hb_001610_110 Hb_086639_070 Hb_086639_070 Hb_005928_110--Hb_086639_070 Hb_003994_180 Hb_003994_180 Hb_005928_110--Hb_003994_180 Hb_000621_080 Hb_000621_080 Hb_005928_110--Hb_000621_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95504 3.55649 1.48514 1.768 2.58075 2.07161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52102 3.99568 1.52977 1.27257 0.242902

CAGE analysis