Hb_000252_200

Information

Type -
Description -
Location Contig252: 166298-170050
Sequence    

Annotation

kegg
ID rcu:RCOM_0024680
description hypothetical protein
nr
ID XP_002527920.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94C27
description F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1
trembl
ID B9SPK1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0024680 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at1g70590 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26370: 166460-166700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000260_270 0.0852310429 - - zinc finger protein, putative [Ricinus communis]
3 Hb_004837_130 0.0864787048 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
4 Hb_011671_180 0.0865349248 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
5 Hb_000023_280 0.088358038 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
6 Hb_000866_170 0.0925288017 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_004994_220 0.0938904132 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
8 Hb_000999_050 0.0949527594 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
9 Hb_004607_050 0.0957608763 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
10 Hb_006913_010 0.0996503116 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
11 Hb_002481_080 0.1013351715 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
12 Hb_000015_040 0.1013550937 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
13 Hb_000329_630 0.1014063406 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
14 Hb_011485_070 0.1023368648 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
15 Hb_006615_020 0.1035417749 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
16 Hb_002078_130 0.1039144455 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
17 Hb_000395_190 0.1041411396 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
18 Hb_010142_030 0.1067939123 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_003761_010 0.1074497018 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_000556_160 0.1078097565 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000252_200 Hb_000252_200 Hb_000260_270 Hb_000260_270 Hb_000252_200--Hb_000260_270 Hb_004837_130 Hb_004837_130 Hb_000252_200--Hb_004837_130 Hb_011671_180 Hb_011671_180 Hb_000252_200--Hb_011671_180 Hb_000023_280 Hb_000023_280 Hb_000252_200--Hb_000023_280 Hb_000866_170 Hb_000866_170 Hb_000252_200--Hb_000866_170 Hb_004994_220 Hb_004994_220 Hb_000252_200--Hb_004994_220 Hb_000395_190 Hb_000395_190 Hb_000260_270--Hb_000395_190 Hb_005731_130 Hb_005731_130 Hb_000260_270--Hb_005731_130 Hb_011218_040 Hb_011218_040 Hb_000260_270--Hb_011218_040 Hb_000260_270--Hb_004994_220 Hb_000329_470 Hb_000329_470 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060 Hb_000999_050 Hb_000999_050 Hb_004837_130--Hb_000999_050 Hb_004607_050 Hb_004607_050 Hb_004837_130--Hb_004607_050 Hb_002675_070 Hb_002675_070 Hb_004837_130--Hb_002675_070 Hb_000174_180 Hb_000174_180 Hb_004837_130--Hb_000174_180 Hb_011485_070 Hb_011485_070 Hb_004837_130--Hb_011485_070 Hb_000497_110 Hb_000497_110 Hb_011671_180--Hb_000497_110 Hb_002000_080 Hb_002000_080 Hb_011671_180--Hb_002000_080 Hb_001009_170 Hb_001009_170 Hb_011671_180--Hb_001009_170 Hb_004920_120 Hb_004920_120 Hb_011671_180--Hb_004920_120 Hb_000031_120 Hb_000031_120 Hb_011671_180--Hb_000031_120 Hb_010142_030 Hb_010142_030 Hb_000023_280--Hb_010142_030 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_001215_040 Hb_001215_040 Hb_000023_280--Hb_001215_040 Hb_000116_410 Hb_000116_410 Hb_000023_280--Hb_000116_410 Hb_000245_040 Hb_000245_040 Hb_000866_170--Hb_000245_040 Hb_000297_010 Hb_000297_010 Hb_000866_170--Hb_000297_010 Hb_000866_170--Hb_000395_190 Hb_000890_210 Hb_000890_210 Hb_000866_170--Hb_000890_210 Hb_004724_150 Hb_004724_150 Hb_000866_170--Hb_004724_150 Hb_001341_170 Hb_001341_170 Hb_000866_170--Hb_001341_170 Hb_002740_110 Hb_002740_110 Hb_004994_220--Hb_002740_110 Hb_004994_220--Hb_001341_170 Hb_010174_110 Hb_010174_110 Hb_004994_220--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_004994_220--Hb_000028_280 Hb_004994_220--Hb_000890_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1114 9.63037 2.5109 9.75461 7.18115 10.3391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9546 10.4379 14.8025 16.6583 6.20535

CAGE analysis