Hb_000252_230

Information

Type -
Description -
Location Contig252: 184228-184458
Sequence    

Annotation

kegg
ID eus:EUTSA_v100163160m
description hypothetical protein
nr
ID KJB50260.1
description hypothetical protein B456_008G160800 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2U449
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G160800 PE=4 SV=1
Gene Ontology
ID GO:0005507
description copper amine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_230 0.0 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
2 Hb_000809_150 0.027171784 - - -
3 Hb_001105_060 0.0296119518 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
4 Hb_043999_010 0.0733098303 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
5 Hb_007765_090 0.0751761921 - - unknown [Glycine max]
6 Hb_131621_010 0.0997166451 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
7 Hb_001486_110 0.1479209431 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
8 Hb_002540_040 0.1696916229 - - BnaC05g39550D [Brassica napus]
9 Hb_004021_110 0.222878213 - - -
10 Hb_032419_020 0.2358353946 - - PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
11 Hb_057486_010 0.265154577 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
12 Hb_000005_210 0.2853608403 - - -
13 Hb_000041_170 0.2853608403 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
14 Hb_000047_040 0.2853608403 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
15 Hb_000072_260 0.2853608403 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
16 Hb_000081_170 0.2853608403 - - -
17 Hb_000088_250 0.2853608403 - - -
18 Hb_000110_220 0.2853608403 - - -
19 Hb_000110_360 0.2853608403 - - -
20 Hb_000111_510 0.2853608403 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000252_230 Hb_000252_230 Hb_000809_150 Hb_000809_150 Hb_000252_230--Hb_000809_150 Hb_001105_060 Hb_001105_060 Hb_000252_230--Hb_001105_060 Hb_043999_010 Hb_043999_010 Hb_000252_230--Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_000252_230--Hb_007765_090 Hb_131621_010 Hb_131621_010 Hb_000252_230--Hb_131621_010 Hb_001486_110 Hb_001486_110 Hb_000252_230--Hb_001486_110 Hb_000809_150--Hb_001105_060 Hb_000809_150--Hb_043999_010 Hb_000809_150--Hb_007765_090 Hb_000809_150--Hb_131621_010 Hb_000809_150--Hb_001486_110 Hb_001105_060--Hb_043999_010 Hb_001105_060--Hb_007765_090 Hb_001105_060--Hb_131621_010 Hb_001105_060--Hb_001486_110 Hb_043999_010--Hb_007765_090 Hb_043999_010--Hb_131621_010 Hb_043999_010--Hb_001486_110 Hb_007765_090--Hb_131621_010 Hb_007765_090--Hb_001486_110 Hb_131621_010--Hb_001486_110 Hb_004021_110 Hb_004021_110 Hb_001486_110--Hb_004021_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 7.55754 0 0 41.6356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis