Hb_000252_240

Information

Type -
Description -
Location Contig252: 195932-208513
Sequence    

Annotation

kegg
ID atr:s00059p00169290
description AMTR_s00059p00169290; hypothetical protein
nr
ID XP_012479333.1
description PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID U5DB49
description MATE efflux family protein OS=Amborella trichopoda GN=AMTR_s00059p00169290 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26374: 198339-208632 , PASA_asmbl_26375: 205533-206220 , PASA_asmbl_26376: 195983-233759
cDNA
(Sanger)
(ID:Location)		 030_P04.ab1: 195983-196766

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_240 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
2 Hb_001544_060 0.0767245409 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
3 Hb_000300_070 0.081887045 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
4 Hb_003453_060 0.0998516945 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
5 Hb_023904_010 0.1050101297 - - -
6 Hb_000445_310 0.1126256768 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
7 Hb_001638_190 0.1168396985 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
8 Hb_007254_010 0.1190741229 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
9 Hb_003337_020 0.1236656858 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
10 Hb_063405_010 0.1252400345 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
11 Hb_002025_290 0.12690248 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
12 Hb_061126_010 0.1281288812 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_005575_010 0.1285448866 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
14 Hb_001172_150 0.1297605855 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
15 Hb_124677_010 0.1304114947 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000692_060 0.1308092267 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_000175_200 0.1316568418 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000697_020 0.1318097039 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
19 Hb_001898_100 0.132050717 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
20 Hb_003777_090 0.1329469843 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000252_240 Hb_000252_240 Hb_001544_060 Hb_001544_060 Hb_000252_240--Hb_001544_060 Hb_000300_070 Hb_000300_070 Hb_000252_240--Hb_000300_070 Hb_003453_060 Hb_003453_060 Hb_000252_240--Hb_003453_060 Hb_023904_010 Hb_023904_010 Hb_000252_240--Hb_023904_010 Hb_000445_310 Hb_000445_310 Hb_000252_240--Hb_000445_310 Hb_001638_190 Hb_001638_190 Hb_000252_240--Hb_001638_190 Hb_001544_060--Hb_000445_310 Hb_001544_060--Hb_003453_060 Hb_001898_100 Hb_001898_100 Hb_001544_060--Hb_001898_100 Hb_003337_020 Hb_003337_020 Hb_001544_060--Hb_003337_020 Hb_001544_060--Hb_001638_190 Hb_000300_070--Hb_000445_310 Hb_000163_140 Hb_000163_140 Hb_000300_070--Hb_000163_140 Hb_000300_070--Hb_001544_060 Hb_124677_010 Hb_124677_010 Hb_000300_070--Hb_124677_010 Hb_002025_290 Hb_002025_290 Hb_000300_070--Hb_002025_290 Hb_005575_010 Hb_005575_010 Hb_003453_060--Hb_005575_010 Hb_078582_010 Hb_078582_010 Hb_003453_060--Hb_078582_010 Hb_003453_060--Hb_002025_290 Hb_003043_130 Hb_003043_130 Hb_003453_060--Hb_003043_130 Hb_003119_130 Hb_003119_130 Hb_003453_060--Hb_003119_130 Hb_001953_110 Hb_001953_110 Hb_023904_010--Hb_001953_110 Hb_005227_030 Hb_005227_030 Hb_023904_010--Hb_005227_030 Hb_007254_010 Hb_007254_010 Hb_023904_010--Hb_007254_010 Hb_023904_010--Hb_003337_020 Hb_000386_010 Hb_000386_010 Hb_023904_010--Hb_000386_010 Hb_000445_310--Hb_000163_140 Hb_001958_030 Hb_001958_030 Hb_000445_310--Hb_001958_030 Hb_000188_070 Hb_000188_070 Hb_000445_310--Hb_000188_070 Hb_000345_400 Hb_000345_400 Hb_001638_190--Hb_000345_400 Hb_001638_190--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001638_190--Hb_000692_060 Hb_001638_190--Hb_001958_030 Hb_001655_080 Hb_001655_080 Hb_001638_190--Hb_001655_080 Hb_000358_160 Hb_000358_160 Hb_001638_190--Hb_000358_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.64692 23.4048 2.29512 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.056871 0.0223719 0 2.60477 15.9181

CAGE analysis