Hb_000252_250

Information

Type -
Description -
Location Contig252: 210129-213388
Sequence    

Annotation

kegg
ID atr:s00005p00263430
description AMTR_s00005p00263430; hypothetical protein
nr
ID AFK37426.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3SAY4
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_250 0.0 - - unknown [Lotus japonicus]
2 Hb_004137_070 0.1723988395 - - -
3 Hb_011206_010 0.1912317619 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
4 Hb_030328_010 0.2119758142 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
5 Hb_139859_010 0.2152373281 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
6 Hb_004883_060 0.21880028 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
7 Hb_110364_010 0.222533912 - - gamma-tubulin complex component, putative [Ricinus communis]
8 Hb_000375_370 0.2236801507 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_003157_030 0.2238280537 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
10 Hb_005914_090 0.2259506309 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_004310_050 0.2273167937 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
12 Hb_000441_160 0.229086706 - - ARF GTPase activator, putative [Ricinus communis]
13 Hb_005635_010 0.2305804671 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
14 Hb_042487_010 0.232910496 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
15 Hb_000608_060 0.2331465214 - - -
16 Hb_005122_060 0.2338162863 - - unnamed protein product [Vitis vinifera]
17 Hb_006816_410 0.2340390561 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
18 Hb_000699_250 0.2350068122 - - Poly(rC)-binding protein, putative [Ricinus communis]
19 Hb_057490_010 0.2350977272 - - PREDICTED: mannose-1-phosphate guanyltransferase alpha [Jatropha curcas]
20 Hb_006723_020 0.2352236662 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]

Gene co-expression network

sample Hb_000252_250 Hb_000252_250 Hb_004137_070 Hb_004137_070 Hb_000252_250--Hb_004137_070 Hb_011206_010 Hb_011206_010 Hb_000252_250--Hb_011206_010 Hb_030328_010 Hb_030328_010 Hb_000252_250--Hb_030328_010 Hb_139859_010 Hb_139859_010 Hb_000252_250--Hb_139859_010 Hb_004883_060 Hb_004883_060 Hb_000252_250--Hb_004883_060 Hb_110364_010 Hb_110364_010 Hb_000252_250--Hb_110364_010 Hb_002928_060 Hb_002928_060 Hb_004137_070--Hb_002928_060 Hb_004137_070--Hb_110364_010 Hb_007188_070 Hb_007188_070 Hb_004137_070--Hb_007188_070 Hb_009969_030 Hb_009969_030 Hb_004137_070--Hb_009969_030 Hb_002601_120 Hb_002601_120 Hb_004137_070--Hb_002601_120 Hb_002815_060 Hb_002815_060 Hb_011206_010--Hb_002815_060 Hb_001731_020 Hb_001731_020 Hb_011206_010--Hb_001731_020 Hb_000213_070 Hb_000213_070 Hb_011206_010--Hb_000213_070 Hb_000085_090 Hb_000085_090 Hb_011206_010--Hb_000085_090 Hb_171788_010 Hb_171788_010 Hb_011206_010--Hb_171788_010 Hb_019053_020 Hb_019053_020 Hb_011206_010--Hb_019053_020 Hb_030328_010--Hb_171788_010 Hb_006723_020 Hb_006723_020 Hb_030328_010--Hb_006723_020 Hb_001386_140 Hb_001386_140 Hb_030328_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_030328_010--Hb_010565_010 Hb_058381_010 Hb_058381_010 Hb_030328_010--Hb_058381_010 Hb_054586_020 Hb_054586_020 Hb_030328_010--Hb_054586_020 Hb_139859_010--Hb_171788_010 Hb_003299_090 Hb_003299_090 Hb_139859_010--Hb_003299_090 Hb_005914_090 Hb_005914_090 Hb_139859_010--Hb_005914_090 Hb_000453_080 Hb_000453_080 Hb_139859_010--Hb_000453_080 Hb_000270_020 Hb_000270_020 Hb_139859_010--Hb_000270_020 Hb_006455_080 Hb_006455_080 Hb_139859_010--Hb_006455_080 Hb_005410_040 Hb_005410_040 Hb_004883_060--Hb_005410_040 Hb_003073_210 Hb_003073_210 Hb_004883_060--Hb_003073_210 Hb_171789_010 Hb_171789_010 Hb_004883_060--Hb_171789_010 Hb_004883_060--Hb_139859_010 Hb_000861_030 Hb_000861_030 Hb_004883_060--Hb_000861_030 Hb_000139_240 Hb_000139_240 Hb_004883_060--Hb_000139_240 Hb_001307_140 Hb_001307_140 Hb_110364_010--Hb_001307_140 Hb_063047_010 Hb_063047_010 Hb_110364_010--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_110364_010--Hb_001040_160 Hb_002341_030 Hb_002341_030 Hb_110364_010--Hb_002341_030 Hb_005635_010 Hb_005635_010 Hb_110364_010--Hb_005635_010 Hb_001871_040 Hb_001871_040 Hb_110364_010--Hb_001871_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173653 0.0938369 0.0401026 0.043899 0.0803526 0.345139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0612858 0 0.0877347 0.116761 0

CAGE analysis