Hb_000252_260

Information

Type -
Description -
Location Contig252: 229621-233910
Sequence    

Annotation

kegg
ID rcu:RCOM_0024820
description multidrug resistance pump, putative
nr
ID XP_012085478.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067JRX8
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_17810 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26376: 195983-233759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_260 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
2 Hb_000326_080 0.1047456735 - - lrr receptor protein kinase, putative [Ricinus communis]
3 Hb_000069_690 0.117130335 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
4 Hb_000272_030 0.1234258469 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
5 Hb_031862_120 0.1299041342 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
6 Hb_001951_230 0.135600637 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
7 Hb_000659_040 0.1359188984 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
8 Hb_000922_350 0.1376657291 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
9 Hb_000941_090 0.1381561021 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
10 Hb_143871_010 0.1395749802 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
11 Hb_000320_390 0.1458718397 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
12 Hb_006570_060 0.1465319761 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
13 Hb_001213_030 0.1469100129 - - PAR1 protein [Theobroma cacao]
14 Hb_001486_100 0.15491594 - - tubulin alpha chain, putative [Ricinus communis]
15 Hb_000260_410 0.1558850475 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
16 Hb_000215_290 0.1562433617 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
17 Hb_020378_020 0.157668258 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_000427_040 0.1588688266 - - Gibberellin receptor GID1, putative [Ricinus communis]
19 Hb_000753_150 0.160633095 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
20 Hb_002838_010 0.1610123309 - - AGPase large subunit protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000252_260 Hb_000252_260 Hb_000326_080 Hb_000326_080 Hb_000252_260--Hb_000326_080 Hb_000069_690 Hb_000069_690 Hb_000252_260--Hb_000069_690 Hb_000272_030 Hb_000272_030 Hb_000252_260--Hb_000272_030 Hb_031862_120 Hb_031862_120 Hb_000252_260--Hb_031862_120 Hb_001951_230 Hb_001951_230 Hb_000252_260--Hb_001951_230 Hb_000659_040 Hb_000659_040 Hb_000252_260--Hb_000659_040 Hb_001486_100 Hb_001486_100 Hb_000326_080--Hb_001486_100 Hb_000326_080--Hb_031862_120 Hb_000326_080--Hb_001951_230 Hb_143871_010 Hb_143871_010 Hb_000326_080--Hb_143871_010 Hb_002740_100 Hb_002740_100 Hb_000326_080--Hb_002740_100 Hb_000922_350 Hb_000922_350 Hb_000069_690--Hb_000922_350 Hb_000069_690--Hb_000659_040 Hb_000069_690--Hb_000272_030 Hb_000069_690--Hb_000326_080 Hb_000856_200 Hb_000856_200 Hb_000069_690--Hb_000856_200 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000260_410 Hb_000260_410 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_031862_120--Hb_143871_010 Hb_031862_120--Hb_000941_090 Hb_005051_010 Hb_005051_010 Hb_031862_120--Hb_005051_010 Hb_000753_150 Hb_000753_150 Hb_031862_120--Hb_000753_150 Hb_000427_040 Hb_000427_040 Hb_031862_120--Hb_000427_040 Hb_031862_120--Hb_000272_030 Hb_000215_290 Hb_000215_290 Hb_001951_230--Hb_000215_290 Hb_004907_070 Hb_004907_070 Hb_001951_230--Hb_004907_070 Hb_000363_250 Hb_000363_250 Hb_001951_230--Hb_000363_250 Hb_005271_180 Hb_005271_180 Hb_001951_230--Hb_005271_180 Hb_001357_060 Hb_001357_060 Hb_001951_230--Hb_001357_060 Hb_003147_040 Hb_003147_040 Hb_000659_040--Hb_003147_040 Hb_000659_040--Hb_000363_250 Hb_000659_040--Hb_000272_030 Hb_001318_100 Hb_001318_100 Hb_000659_040--Hb_001318_100 Hb_000659_040--Hb_000856_200 Hb_007894_070 Hb_007894_070 Hb_000659_040--Hb_007894_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0114369 0.896708 0.700969 1.07966 0 0.042391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130086 0.0614102 0 0.269102 1.46492

CAGE analysis