Hb_000254_060

Information

Type -
Description -
Location Contig254: 104444-108804
Sequence    

Annotation

kegg
ID rcu:RCOM_1493990
description hypothetical protein
nr
ID XP_002516035.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQL6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1493990 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sulfite exporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26529: 107593-108827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001622_020 0.0783087449 - - -
3 Hb_001778_040 0.0896683029 - - hypothetical protein VITISV_021035 [Vitis vinifera]
4 Hb_168319_060 0.1020643656 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
5 Hb_065521_010 0.1028893843 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
6 Hb_029510_090 0.120263685 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
7 Hb_000054_130 0.1216144843 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
8 Hb_007875_020 0.1220322606 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
9 Hb_060152_010 0.1350380719 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
10 Hb_000751_060 0.1388056755 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
11 Hb_004667_030 0.1402401695 - - hypothetical protein VITISV_034568 [Vitis vinifera]
12 Hb_011849_020 0.1413974308 - - dioxygenase family protein [Populus trichocarpa]
13 Hb_000120_880 0.1416176996 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
14 Hb_001675_040 0.1418163828 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003983_010 0.144736017 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
16 Hb_167211_010 0.1457191148 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
17 Hb_002448_020 0.1472800156 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
18 Hb_005332_050 0.149795086 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
19 Hb_000009_430 0.1498889357 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000258_210 0.1523280272 - - prenyl-dependent CAAX protease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000254_060 Hb_000254_060 Hb_001622_020 Hb_001622_020 Hb_000254_060--Hb_001622_020 Hb_001778_040 Hb_001778_040 Hb_000254_060--Hb_001778_040 Hb_168319_060 Hb_168319_060 Hb_000254_060--Hb_168319_060 Hb_065521_010 Hb_065521_010 Hb_000254_060--Hb_065521_010 Hb_029510_090 Hb_029510_090 Hb_000254_060--Hb_029510_090 Hb_000054_130 Hb_000054_130 Hb_000254_060--Hb_000054_130 Hb_001622_020--Hb_000054_130 Hb_001622_020--Hb_001778_040 Hb_167211_010 Hb_167211_010 Hb_001622_020--Hb_167211_010 Hb_060152_010 Hb_060152_010 Hb_001622_020--Hb_060152_010 Hb_001622_020--Hb_168319_060 Hb_001778_040--Hb_000054_130 Hb_001778_040--Hb_167211_010 Hb_003992_220 Hb_003992_220 Hb_001778_040--Hb_003992_220 Hb_001629_050 Hb_001629_050 Hb_001778_040--Hb_001629_050 Hb_007875_020 Hb_007875_020 Hb_168319_060--Hb_007875_020 Hb_168319_060--Hb_065521_010 Hb_004943_010 Hb_004943_010 Hb_168319_060--Hb_004943_010 Hb_168319_060--Hb_060152_010 Hb_168319_060--Hb_029510_090 Hb_065521_010--Hb_007875_020 Hb_065521_010--Hb_029510_090 Hb_002448_020 Hb_002448_020 Hb_065521_010--Hb_002448_020 Hb_014967_020 Hb_014967_020 Hb_065521_010--Hb_014967_020 Hb_007386_030 Hb_007386_030 Hb_065521_010--Hb_007386_030 Hb_029510_090--Hb_007875_020 Hb_029510_090--Hb_007386_030 Hb_029510_090--Hb_002448_020 Hb_000054_130--Hb_167211_010 Hb_181463_020 Hb_181463_020 Hb_000054_130--Hb_181463_020 Hb_001109_170 Hb_001109_170 Hb_000054_130--Hb_001109_170 Hb_000237_120 Hb_000237_120 Hb_000054_130--Hb_000237_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0102001 1.95671 3.06955 13.8755 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0463713 0.018243 0 12.7913 12.3669

CAGE analysis