Hb_000254_080

Information

Type -
Description -
Location Contig254: 117273-119939
Sequence    

Annotation

kegg
ID rcu:RCOM_1493970
description hypothetical protein
nr
ID XP_012073367.1
description PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06297 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26531: 118848-119272 , PASA_asmbl_26532: 117193-131054
cDNA
(Sanger)
(ID:Location)		 036_L14.ab1: 119460-131054

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_080 0.0 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
2 Hb_004837_080 0.047861524 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
3 Hb_002119_150 0.0679018377 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
4 Hb_000122_230 0.0831566619 - - laccase, putative [Ricinus communis]
5 Hb_001269_540 0.0868983599 - - hypothetical protein VITISV_038016 [Vitis vinifera]
6 Hb_080797_010 0.0873357562 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
7 Hb_000997_370 0.0900938472 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
8 Hb_000920_100 0.0938390429 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_000230_490 0.0959414558 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007620_020 0.0963151767 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_000538_110 0.0971050974 - - sucrose synthase 1 [Hevea brasiliensis]
12 Hb_001488_160 0.1007985979 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
13 Hb_000260_520 0.1058900704 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_140595_020 0.1065663479 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
15 Hb_089124_010 0.1078585634 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
16 Hb_003358_030 0.1171732133 - - ankyrin-kinase, putative [Ricinus communis]
17 Hb_000608_190 0.1172279013 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
18 Hb_003038_070 0.1187282892 - - syntaxin, putative [Ricinus communis]
19 Hb_140595_030 0.1210084527 - - -
20 Hb_011214_080 0.1218751853 - - sucrose synthase 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000254_080 Hb_000254_080 Hb_004837_080 Hb_004837_080 Hb_000254_080--Hb_004837_080 Hb_002119_150 Hb_002119_150 Hb_000254_080--Hb_002119_150 Hb_000122_230 Hb_000122_230 Hb_000254_080--Hb_000122_230 Hb_001269_540 Hb_001269_540 Hb_000254_080--Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_000254_080--Hb_080797_010 Hb_000997_370 Hb_000997_370 Hb_000254_080--Hb_000997_370 Hb_004837_080--Hb_002119_150 Hb_004837_080--Hb_001269_540 Hb_004837_080--Hb_080797_010 Hb_007620_020 Hb_007620_020 Hb_004837_080--Hb_007620_020 Hb_004837_080--Hb_000122_230 Hb_002119_150--Hb_001269_540 Hb_000538_110 Hb_000538_110 Hb_002119_150--Hb_000538_110 Hb_000260_520 Hb_000260_520 Hb_002119_150--Hb_000260_520 Hb_002119_150--Hb_080797_010 Hb_002245_060 Hb_002245_060 Hb_000122_230--Hb_002245_060 Hb_001408_200 Hb_001408_200 Hb_000122_230--Hb_001408_200 Hb_000122_230--Hb_080797_010 Hb_000122_230--Hb_007620_020 Hb_001269_540--Hb_080797_010 Hb_000230_490 Hb_000230_490 Hb_001269_540--Hb_000230_490 Hb_140595_020 Hb_140595_020 Hb_001269_540--Hb_140595_020 Hb_001097_140 Hb_001097_140 Hb_080797_010--Hb_001097_140 Hb_080797_010--Hb_000230_490 Hb_002081_140 Hb_002081_140 Hb_000997_370--Hb_002081_140 Hb_000997_370--Hb_002119_150 Hb_000997_370--Hb_004837_080 Hb_000997_370--Hb_000538_110 Hb_029386_010 Hb_029386_010 Hb_000997_370--Hb_029386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171875 11.6491 18.9889 88.851 0.0720223 0.400736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.204652 0.241497 0.854412 9.8754 183.232

CAGE analysis