Hb_000254_090

Information

Type -
Description -
Location Contig254: 132145-136618
Sequence    

Annotation

kegg
ID rcu:RCOM_1493960
description lupus la ribonucleoprotein, putative
nr
ID XP_012073369.1
description PREDICTED: la protein 2 [Jatropha curcas]
swissprot
ID Q93ZV7
description La protein 1 OS=Arabidopsis thaliana GN=LA1 PE=1 SV=1
trembl
ID A0A067KMC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06298 PE=4 SV=1
Gene Ontology
ID GO:0044424
description la protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26534: 132157-134757 , PASA_asmbl_26535: 134777-135843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_090 0.0 - - PREDICTED: la protein 2 [Jatropha curcas]
2 Hb_029879_070 0.0486755908 - - PREDICTED: phospholipase A I [Jatropha curcas]
3 Hb_054865_150 0.0580282015 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
4 Hb_026198_070 0.0601606394 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
5 Hb_029510_050 0.0609004456 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
6 Hb_000156_010 0.063054472 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
7 Hb_000172_290 0.0633426699 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
8 Hb_005291_050 0.0636610785 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
9 Hb_000665_060 0.0691167235 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
10 Hb_007479_040 0.0707990129 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004567_090 0.0715081868 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
12 Hb_012498_010 0.0718518082 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
13 Hb_002740_180 0.0719684281 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004109_080 0.0723514375 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
15 Hb_002110_190 0.0727662858 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
16 Hb_000441_200 0.0729018707 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
17 Hb_002044_150 0.0734428241 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
18 Hb_002600_150 0.0736968249 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
19 Hb_002685_210 0.0781777045 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
20 Hb_002263_020 0.0782295971 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000254_090 Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_054865_150 Hb_054865_150 Hb_000254_090--Hb_054865_150 Hb_026198_070 Hb_026198_070 Hb_000254_090--Hb_026198_070 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000156_010 Hb_000156_010 Hb_000254_090--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_000254_090--Hb_000172_290 Hb_029879_070--Hb_029510_050 Hb_006275_070 Hb_006275_070 Hb_029879_070--Hb_006275_070 Hb_002685_210 Hb_002685_210 Hb_029879_070--Hb_002685_210 Hb_027380_220 Hb_027380_220 Hb_029879_070--Hb_027380_220 Hb_005291_050 Hb_005291_050 Hb_029879_070--Hb_005291_050 Hb_011037_030 Hb_011037_030 Hb_054865_150--Hb_011037_030 Hb_054865_150--Hb_000156_010 Hb_054865_150--Hb_000172_290 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_026198_070--Hb_002110_190 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_002044_150 Hb_002044_150 Hb_026198_070--Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_026198_070--Hb_007479_040 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_029510_050--Hb_002685_210 Hb_000156_010--Hb_011037_030 Hb_003750_050 Hb_003750_050 Hb_000156_010--Hb_003750_050 Hb_012498_010 Hb_012498_010 Hb_000156_010--Hb_012498_010 Hb_105328_020 Hb_105328_020 Hb_000156_010--Hb_105328_020 Hb_000156_010--Hb_005291_050 Hb_000172_290--Hb_026198_070 Hb_000172_290--Hb_002685_210 Hb_006478_020 Hb_006478_020 Hb_000172_290--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_000172_290--Hb_001971_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7618 7.35857 8.18622 15.3555 14.2673 16.5456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.891 12.926 15.389 15.9698 16.6359

CAGE analysis