Hb_000254_100

Information

Type -
Description -
Location Contig254: 148237-156472
Sequence    

Annotation

kegg
ID rcu:RCOM_1493920
description glycerate dehydrogenase, putative (EC:1.1.1.26)
nr
ID XP_012073372.1
description PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
swissprot
ID Q65CJ7
description Hydroxyphenylpyruvate reductase OS=Plectranthus scutellarioides GN=HPPR PE=1 SV=2
trembl
ID A0A067KYC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06301 PE=3 SV=1
Gene Ontology
ID GO:0005829
description glyoxylate hydroxypyruvate reductase a hpr2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26539: 150320-152424 , PASA_asmbl_26540: 153298-156429 , PASA_asmbl_26542: 154280-154532 , PASA_asmbl_26543: 155202-155428
cDNA
(Sanger)
(ID:Location)		 049_B23.ab1: 154015-156429

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_100 0.0 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
2 Hb_000847_080 0.058963797 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
3 Hb_004109_120 0.0610194662 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
4 Hb_030414_040 0.0621667871 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
5 Hb_000567_070 0.0629593893 - - autophagy protein, putative [Ricinus communis]
6 Hb_003186_020 0.0632690908 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
7 Hb_001824_080 0.0649248395 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
8 Hb_007821_020 0.0671765655 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
9 Hb_138435_010 0.0680469416 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
10 Hb_170416_010 0.0691204207 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
11 Hb_031284_010 0.0703742382 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
12 Hb_002055_020 0.0716316015 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
13 Hb_000115_280 0.0721031307 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
14 Hb_000304_070 0.0738725625 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
15 Hb_002811_270 0.0757629103 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
16 Hb_000757_030 0.076750358 - - radical sam protein, putative [Ricinus communis]
17 Hb_004096_240 0.076897351 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
18 Hb_002326_110 0.0773758687 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
19 Hb_007765_100 0.0779120424 - - PREDICTED: helicase SKI2W [Jatropha curcas]
20 Hb_087313_010 0.0787044668 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000254_100 Hb_000254_100 Hb_000847_080 Hb_000847_080 Hb_000254_100--Hb_000847_080 Hb_004109_120 Hb_004109_120 Hb_000254_100--Hb_004109_120 Hb_030414_040 Hb_030414_040 Hb_000254_100--Hb_030414_040 Hb_000567_070 Hb_000567_070 Hb_000254_100--Hb_000567_070 Hb_003186_020 Hb_003186_020 Hb_000254_100--Hb_003186_020 Hb_001824_080 Hb_001824_080 Hb_000254_100--Hb_001824_080 Hb_077026_010 Hb_077026_010 Hb_000847_080--Hb_077026_010 Hb_138435_010 Hb_138435_010 Hb_000847_080--Hb_138435_010 Hb_002326_110 Hb_002326_110 Hb_000847_080--Hb_002326_110 Hb_001153_210 Hb_001153_210 Hb_000847_080--Hb_001153_210 Hb_000847_080--Hb_003186_020 Hb_000207_300 Hb_000207_300 Hb_004109_120--Hb_000207_300 Hb_004109_120--Hb_001824_080 Hb_000724_020 Hb_000724_020 Hb_004109_120--Hb_000724_020 Hb_001158_160 Hb_001158_160 Hb_004109_120--Hb_001158_160 Hb_004339_040 Hb_004339_040 Hb_004109_120--Hb_004339_040 Hb_030414_040--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_030414_040--Hb_000120_210 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_004096_240 Hb_004096_240 Hb_030414_040--Hb_004096_240 Hb_000111_170 Hb_000111_170 Hb_030414_040--Hb_000111_170 Hb_007821_020 Hb_007821_020 Hb_000567_070--Hb_007821_020 Hb_000390_230 Hb_000390_230 Hb_000567_070--Hb_000390_230 Hb_000567_070--Hb_003186_020 Hb_006483_110 Hb_006483_110 Hb_000567_070--Hb_006483_110 Hb_000115_280 Hb_000115_280 Hb_000567_070--Hb_000115_280 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_031284_010 Hb_031284_010 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_003186_020--Hb_000115_280 Hb_004109_260 Hb_004109_260 Hb_001824_080--Hb_004109_260 Hb_000304_070 Hb_000304_070 Hb_001824_080--Hb_000304_070 Hb_001824_080--Hb_004339_040 Hb_001824_080--Hb_007821_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3218 16.0692 35.2751 17.0984 17.7475 14.3266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6961 13.5032 12.8581 18.1456 25.1255

CAGE analysis