Hb_000254_120

Information

Type -
Description -
Location Contig254: 157123-159806
Sequence    

Annotation

kegg
ID rcu:RCOM_1493800
description hypothetical protein
nr
ID XP_002516026.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CA89
description Rop guanine nucleotide exchange factor 12 OS=Arabidopsis thaliana GN=ROPGEF12 PE=1 SV=1
trembl
ID B9RQK7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1493800 PE=4 SV=1
Gene Ontology
ID GO:0005886
description rop guanine nucleotide exchange factor 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26544: 158745-159127 , PASA_asmbl_26545: 159157-159636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001377_060 0.1156791395 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
3 Hb_003602_030 0.1280591269 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
4 Hb_002835_090 0.1344831768 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
5 Hb_001584_050 0.1386618846 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_005332_150 0.1430967001 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
7 Hb_011900_020 0.145173727 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
8 Hb_000966_040 0.1557866468 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
9 Hb_001377_210 0.1579980034 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_000193_220 0.15904003 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
11 Hb_000069_370 0.1604350174 - - -
12 Hb_003687_160 0.1607248259 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_000360_010 0.1615472907 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001907_080 0.1637491339 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
15 Hb_004109_130 0.164690606 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
16 Hb_072212_010 0.165272451 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
17 Hb_001257_110 0.168480218 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
18 Hb_001155_020 0.1687815336 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
19 Hb_006277_080 0.1699818776 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
20 Hb_007253_030 0.1764630415 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_000254_120 Hb_000254_120 Hb_001377_060 Hb_001377_060 Hb_000254_120--Hb_001377_060 Hb_003602_030 Hb_003602_030 Hb_000254_120--Hb_003602_030 Hb_002835_090 Hb_002835_090 Hb_000254_120--Hb_002835_090 Hb_001584_050 Hb_001584_050 Hb_000254_120--Hb_001584_050 Hb_005332_150 Hb_005332_150 Hb_000254_120--Hb_005332_150 Hb_011900_020 Hb_011900_020 Hb_000254_120--Hb_011900_020 Hb_001377_060--Hb_002835_090 Hb_004712_200 Hb_004712_200 Hb_001377_060--Hb_004712_200 Hb_000193_220 Hb_000193_220 Hb_001377_060--Hb_000193_220 Hb_010721_020 Hb_010721_020 Hb_001377_060--Hb_010721_020 Hb_001377_060--Hb_001584_050 Hb_137600_010 Hb_137600_010 Hb_003602_030--Hb_137600_010 Hb_000479_210 Hb_000479_210 Hb_003602_030--Hb_000479_210 Hb_006277_080 Hb_006277_080 Hb_003602_030--Hb_006277_080 Hb_001257_110 Hb_001257_110 Hb_003602_030--Hb_001257_110 Hb_005977_040 Hb_005977_040 Hb_003602_030--Hb_005977_040 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_007595_050 Hb_007595_050 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370 Hb_000107_540 Hb_000107_540 Hb_001584_050--Hb_000107_540 Hb_010080_070 Hb_010080_070 Hb_001584_050--Hb_010080_070 Hb_001377_210 Hb_001377_210 Hb_001584_050--Hb_001377_210 Hb_002333_040 Hb_002333_040 Hb_001584_050--Hb_002333_040 Hb_001584_050--Hb_001257_110 Hb_000011_440 Hb_000011_440 Hb_001584_050--Hb_000011_440 Hb_000038_020 Hb_000038_020 Hb_005332_150--Hb_000038_020 Hb_004109_130 Hb_004109_130 Hb_005332_150--Hb_004109_130 Hb_000966_040 Hb_000966_040 Hb_005332_150--Hb_000966_040 Hb_168031_020 Hb_168031_020 Hb_005332_150--Hb_168031_020 Hb_005332_150--Hb_000069_370 Hb_166127_030 Hb_166127_030 Hb_005332_150--Hb_166127_030 Hb_156850_020 Hb_156850_020 Hb_011900_020--Hb_156850_020 Hb_011900_020--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_011900_020--Hb_000360_010 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_011900_020--Hb_010080_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.08259 0.335286 0.934204 0.167719 0.0943889 0.173557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0558944 0.0219879 0.041456 0.175314 2.63205

CAGE analysis