Hb_000254_150

Information

Type -
Description -
Location Contig254: 170304-174827
Sequence    

Annotation

kegg
ID rcu:RCOM_1493760
description homeobox protein, putative
nr
ID XP_012073376.1
description PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
swissprot
ID P46607
description Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3
trembl
ID A0A067KZK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06305 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein glabra 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_150 0.0 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
2 Hb_006569_110 0.0848247236 - - conserved hypothetical protein [Ricinus communis]
3 Hb_018212_020 0.0967963894 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
4 Hb_010813_030 0.0981400292 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
5 Hb_005618_110 0.1026759673 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_001675_130 0.1029295087 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
7 Hb_006938_010 0.1080265495 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_132515_010 0.1321062182 - - phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_003060_080 0.1324279997 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
10 Hb_002928_220 0.1339164165 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
11 Hb_007894_260 0.136657258 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_000876_050 0.1409487709 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
13 Hb_002740_170 0.1418199637 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
14 Hb_006326_030 0.1439574045 - - conserved hypothetical protein [Ricinus communis]
15 Hb_040963_010 0.148908312 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
16 Hb_006970_100 0.1518576934 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_029508_030 0.1529543495 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
18 Hb_003767_010 0.1531257317 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
19 Hb_000177_120 0.1550125614 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
20 Hb_002542_090 0.1555246565 - - Potassium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000254_150 Hb_000254_150 Hb_006569_110 Hb_006569_110 Hb_000254_150--Hb_006569_110 Hb_018212_020 Hb_018212_020 Hb_000254_150--Hb_018212_020 Hb_010813_030 Hb_010813_030 Hb_000254_150--Hb_010813_030 Hb_005618_110 Hb_005618_110 Hb_000254_150--Hb_005618_110 Hb_001675_130 Hb_001675_130 Hb_000254_150--Hb_001675_130 Hb_006938_010 Hb_006938_010 Hb_000254_150--Hb_006938_010 Hb_006569_110--Hb_006938_010 Hb_007894_260 Hb_007894_260 Hb_006569_110--Hb_007894_260 Hb_003060_080 Hb_003060_080 Hb_006569_110--Hb_003060_080 Hb_002928_220 Hb_002928_220 Hb_006569_110--Hb_002928_220 Hb_006970_100 Hb_006970_100 Hb_006569_110--Hb_006970_100 Hb_018212_020--Hb_010813_030 Hb_132515_010 Hb_132515_010 Hb_018212_020--Hb_132515_010 Hb_006326_030 Hb_006326_030 Hb_018212_020--Hb_006326_030 Hb_018212_020--Hb_006569_110 Hb_002997_050 Hb_002997_050 Hb_018212_020--Hb_002997_050 Hb_000876_050 Hb_000876_050 Hb_010813_030--Hb_000876_050 Hb_010813_030--Hb_006326_030 Hb_010813_030--Hb_132515_010 Hb_010813_030--Hb_001675_130 Hb_040963_010 Hb_040963_010 Hb_005618_110--Hb_040963_010 Hb_148121_030 Hb_148121_030 Hb_005618_110--Hb_148121_030 Hb_000149_120 Hb_000149_120 Hb_005618_110--Hb_000149_120 Hb_032299_070 Hb_032299_070 Hb_005618_110--Hb_032299_070 Hb_002740_170 Hb_002740_170 Hb_005618_110--Hb_002740_170 Hb_007919_030 Hb_007919_030 Hb_001675_130--Hb_007919_030 Hb_000684_010 Hb_000684_010 Hb_001675_130--Hb_000684_010 Hb_003767_010 Hb_003767_010 Hb_001675_130--Hb_003767_010 Hb_000649_280 Hb_000649_280 Hb_001675_130--Hb_000649_280 Hb_001331_040 Hb_001331_040 Hb_006938_010--Hb_001331_040 Hb_000381_030 Hb_000381_030 Hb_006938_010--Hb_000381_030 Hb_006938_010--Hb_007894_260 Hb_006949_030 Hb_006949_030 Hb_006938_010--Hb_006949_030 Hb_002542_090 Hb_002542_090 Hb_006938_010--Hb_002542_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0293151 14.2103 2.98975 1.86599 0.00733626 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0654253 0.0499463 24.7913 10.0532

CAGE analysis