Hb_000256_020

Information

Type transcription factor
Description TF Family: PHD
Location Contig256: 49788-69270
Sequence    

Annotation

kegg
ID rcu:RCOM_0921900
description chromodomain helicase DNA binding protein, putative (EC:2.7.11.1)
nr
ID XP_012076452.1
description PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
swissprot
ID Q9S775
description CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1
trembl
ID A0A067KBL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07103 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chd3-type chromatin-remodeling factor pickle-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26671: 48499-53531 , PASA_asmbl_26673: 66671-67006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_020 0.0 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
2 Hb_001723_140 0.0772711221 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
3 Hb_088144_020 0.0802193601 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
4 Hb_004064_050 0.0829269401 - - Structural maintenance of chromosome, putative [Ricinus communis]
5 Hb_000184_150 0.0851704876 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
6 Hb_002045_250 0.0870811601 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
7 Hb_001171_030 0.0875938266 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
8 Hb_003216_090 0.089541677 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
9 Hb_008114_050 0.0902896541 - - hypothetical protein POPTR_0006s02430g [Populus trichocarpa]
10 Hb_001381_050 0.0914818207 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_001492_040 0.0926444896 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_000088_050 0.0932989254 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
13 Hb_002686_040 0.0938348837 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
14 Hb_085742_010 0.0942697524 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
15 Hb_003142_040 0.095112781 - - Sf3a3 [Gossypium arboreum]
16 Hb_001085_290 0.0967255009 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
17 Hb_006618_090 0.0969886186 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
18 Hb_001935_160 0.0970544782 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
19 Hb_140049_080 0.0970698607 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
20 Hb_000823_030 0.0972040033 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]

Gene co-expression network

sample Hb_000256_020 Hb_000256_020 Hb_001723_140 Hb_001723_140 Hb_000256_020--Hb_001723_140 Hb_088144_020 Hb_088144_020 Hb_000256_020--Hb_088144_020 Hb_004064_050 Hb_004064_050 Hb_000256_020--Hb_004064_050 Hb_000184_150 Hb_000184_150 Hb_000256_020--Hb_000184_150 Hb_002045_250 Hb_002045_250 Hb_000256_020--Hb_002045_250 Hb_001171_030 Hb_001171_030 Hb_000256_020--Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_088144_020--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_088144_020--Hb_002968_070 Hb_000823_030 Hb_000823_030 Hb_088144_020--Hb_000823_030 Hb_001953_120 Hb_001953_120 Hb_088144_020--Hb_001953_120 Hb_001221_180 Hb_001221_180 Hb_088144_020--Hb_001221_180 Hb_088144_020--Hb_001171_030 Hb_002475_040 Hb_002475_040 Hb_004064_050--Hb_002475_040 Hb_158092_080 Hb_158092_080 Hb_004064_050--Hb_158092_080 Hb_000243_130 Hb_000243_130 Hb_004064_050--Hb_000243_130 Hb_005402_040 Hb_005402_040 Hb_004064_050--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_004064_050--Hb_003124_160 Hb_000377_050 Hb_000377_050 Hb_004064_050--Hb_000377_050 Hb_001047_200 Hb_001047_200 Hb_000184_150--Hb_001047_200 Hb_000577_030 Hb_000577_030 Hb_000184_150--Hb_000577_030 Hb_000184_150--Hb_000823_030 Hb_000184_150--Hb_001723_140 Hb_000917_160 Hb_000917_160 Hb_000184_150--Hb_000917_160 Hb_006618_090 Hb_006618_090 Hb_000184_150--Hb_006618_090 Hb_002092_070 Hb_002092_070 Hb_002045_250--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002045_250--Hb_004429_010 Hb_002045_250--Hb_001723_140 Hb_009252_050 Hb_009252_050 Hb_002045_250--Hb_009252_050 Hb_000046_600 Hb_000046_600 Hb_002045_250--Hb_000046_600 Hb_002045_250--Hb_000529_060 Hb_001171_030--Hb_003142_040 Hb_001171_030--Hb_002968_070 Hb_000189_630 Hb_000189_630 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_001171_030--Hb_000529_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56058 6.27234 5.36371 3.4506 3.50391 5.02684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28192 1.14996 2.55253 6.24638 4.07593

CAGE analysis