Hb_000256_040

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig256: 80825-87108
Sequence    

Annotation

kegg
ID rcu:RCOM_0922020
description two-component system sensor histidine kinase/response regulator, putative
nr
ID XP_012076456.1
description PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
swissprot
ID P62598
description Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2
trembl
ID A0A067KNZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07105 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator arr12-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26676: 80818-87031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_040 0.0 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
2 Hb_007533_040 0.0866934278 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_000197_250 0.0933340054 - - Chaperone protein dnaJ, putative [Ricinus communis]
4 Hb_005245_100 0.0993075942 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
5 Hb_000140_090 0.100769644 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
6 Hb_001357_200 0.1036891091 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
7 Hb_000925_130 0.1065448673 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
8 Hb_004162_130 0.1078687164 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006740_030 0.1094994362 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
10 Hb_000304_080 0.1095162081 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
11 Hb_001124_010 0.1113335843 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X2 [Jatropha curcas]
12 Hb_003657_010 0.1130272847 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003913_130 0.1132362506 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
14 Hb_000069_640 0.1140623108 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
15 Hb_001761_120 0.1141863611 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
16 Hb_000774_020 0.114586399 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
17 Hb_089839_010 0.1148273179 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
18 Hb_013405_020 0.1153901293 - - -
19 Hb_010578_080 0.1155722596 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
20 Hb_006132_090 0.1157564601 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000256_040 Hb_000256_040 Hb_007533_040 Hb_007533_040 Hb_000256_040--Hb_007533_040 Hb_000197_250 Hb_000197_250 Hb_000256_040--Hb_000197_250 Hb_005245_100 Hb_005245_100 Hb_000256_040--Hb_005245_100 Hb_000140_090 Hb_000140_090 Hb_000256_040--Hb_000140_090 Hb_001357_200 Hb_001357_200 Hb_000256_040--Hb_001357_200 Hb_000925_130 Hb_000925_130 Hb_000256_040--Hb_000925_130 Hb_004583_010 Hb_004583_010 Hb_007533_040--Hb_004583_010 Hb_007533_040--Hb_000140_090 Hb_003913_130 Hb_003913_130 Hb_007533_040--Hb_003913_130 Hb_007533_040--Hb_001357_200 Hb_006740_030 Hb_006740_030 Hb_007533_040--Hb_006740_030 Hb_005601_040 Hb_005601_040 Hb_007533_040--Hb_005601_040 Hb_003657_010 Hb_003657_010 Hb_000197_250--Hb_003657_010 Hb_000197_250--Hb_005245_100 Hb_004117_260 Hb_004117_260 Hb_000197_250--Hb_004117_260 Hb_000393_020 Hb_000393_020 Hb_000197_250--Hb_000393_020 Hb_006162_030 Hb_006162_030 Hb_000197_250--Hb_006162_030 Hb_001717_010 Hb_001717_010 Hb_005245_100--Hb_001717_010 Hb_003607_130 Hb_003607_130 Hb_005245_100--Hb_003607_130 Hb_005245_100--Hb_000925_130 Hb_000088_170 Hb_000088_170 Hb_005245_100--Hb_000088_170 Hb_000069_310 Hb_000069_310 Hb_005245_100--Hb_000069_310 Hb_062226_130 Hb_062226_130 Hb_005245_100--Hb_062226_130 Hb_000140_090--Hb_006740_030 Hb_000928_070 Hb_000928_070 Hb_000140_090--Hb_000928_070 Hb_001541_120 Hb_001541_120 Hb_000140_090--Hb_001541_120 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080 Hb_000025_350 Hb_000025_350 Hb_001357_200--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_001357_200--Hb_001014_060 Hb_001357_200--Hb_003913_130 Hb_001014_070 Hb_001014_070 Hb_001357_200--Hb_001014_070 Hb_000304_080 Hb_000304_080 Hb_001357_200--Hb_000304_080 Hb_000288_030 Hb_000288_030 Hb_000925_130--Hb_000288_030 Hb_013358_040 Hb_013358_040 Hb_000925_130--Hb_013358_040 Hb_000925_130--Hb_000928_070 Hb_000349_260 Hb_000349_260 Hb_000925_130--Hb_000349_260 Hb_000345_310 Hb_000345_310 Hb_000925_130--Hb_000345_310 Hb_000375_350 Hb_000375_350 Hb_000925_130--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.18567 8.86835 16.8654 12.1699 5.65369 5.37637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.5874 10.4579 16.893 5.10604 9.89596

CAGE analysis