Hb_000256_050

Information

Type -
Description -
Location Contig256: 98674-100130
Sequence    

Annotation

kegg
ID rcu:RCOM_0922130
description chitinase, putative (EC:3.2.1.14)
nr
ID XP_002515448.1
description chitinase, putative [Ricinus communis]
swissprot
ID Q13231
description Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1
trembl
ID B9RNX9
description Chitinase, putative OS=Ricinus communis GN=RCOM_0922130 PE=3 SV=1
Gene Ontology
ID GO:0004568
description acidic mammalian chitinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_050 0.0 - - chitinase, putative [Ricinus communis]
2 Hb_001623_020 0.0483802004 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
3 Hb_013726_100 0.0550351996 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
4 Hb_002475_110 0.0834946548 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
5 Hb_002572_060 0.0870541957 - - conserved hypothetical protein [Ricinus communis]
6 Hb_167802_010 0.0889324099 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
7 Hb_009393_010 0.0913560745 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
8 Hb_009683_060 0.0932687835 - - -
9 Hb_000610_030 0.0969904355 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
10 Hb_104855_020 0.0990556754 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_143232_020 0.099261492 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
12 Hb_093204_010 0.0994334494 - - conserved hypothetical protein [Ricinus communis]
13 Hb_025477_030 0.1013018214 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
14 Hb_011111_010 0.1088456099 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
15 Hb_004767_040 0.1207040516 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
16 Hb_052530_030 0.1210969133 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
17 Hb_000904_090 0.123722622 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
18 Hb_006519_010 0.1246657073 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
19 Hb_004994_070 0.1262833376 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
20 Hb_002486_030 0.1274049541 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000256_050 Hb_000256_050 Hb_001623_020 Hb_001623_020 Hb_000256_050--Hb_001623_020 Hb_013726_100 Hb_013726_100 Hb_000256_050--Hb_013726_100 Hb_002475_110 Hb_002475_110 Hb_000256_050--Hb_002475_110 Hb_002572_060 Hb_002572_060 Hb_000256_050--Hb_002572_060 Hb_167802_010 Hb_167802_010 Hb_000256_050--Hb_167802_010 Hb_009393_010 Hb_009393_010 Hb_000256_050--Hb_009393_010 Hb_104855_020 Hb_104855_020 Hb_001623_020--Hb_104855_020 Hb_001623_020--Hb_013726_100 Hb_143232_020 Hb_143232_020 Hb_001623_020--Hb_143232_020 Hb_009683_060 Hb_009683_060 Hb_001623_020--Hb_009683_060 Hb_001623_020--Hb_002475_110 Hb_013726_100--Hb_002475_110 Hb_013726_100--Hb_002572_060 Hb_025477_030 Hb_025477_030 Hb_013726_100--Hb_025477_030 Hb_013726_100--Hb_009683_060 Hb_027214_060 Hb_027214_060 Hb_002475_110--Hb_027214_060 Hb_000227_410 Hb_000227_410 Hb_002475_110--Hb_000227_410 Hb_002475_110--Hb_025477_030 Hb_000904_090 Hb_000904_090 Hb_002475_110--Hb_000904_090 Hb_000959_290 Hb_000959_290 Hb_002572_060--Hb_000959_290 Hb_000610_030 Hb_000610_030 Hb_002572_060--Hb_000610_030 Hb_011671_290 Hb_011671_290 Hb_002572_060--Hb_011671_290 Hb_093204_010 Hb_093204_010 Hb_002572_060--Hb_093204_010 Hb_004994_070 Hb_004994_070 Hb_002572_060--Hb_004994_070 Hb_167802_010--Hb_009683_060 Hb_167802_010--Hb_001623_020 Hb_167802_010--Hb_104855_020 Hb_167802_010--Hb_000904_090 Hb_167802_010--Hb_025477_030 Hb_000338_020 Hb_000338_020 Hb_167802_010--Hb_000338_020 Hb_009393_010--Hb_025477_030 Hb_009393_010--Hb_013726_100 Hb_009393_010--Hb_167802_010 Hb_009393_010--Hb_002475_110 Hb_000134_010 Hb_000134_010 Hb_009393_010--Hb_000134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.295678 0.0120762 0.0476719 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis