Hb_000256_060

Information

Type -
Description -
Location Contig256: 117891-118769
Sequence    

Annotation

kegg
ID rcu:RCOM_0922240
description zinc finger protein, putative
nr
ID XP_012076458.1
description PREDICTED: zinc finger protein 3 [Jatropha curcas]
swissprot
ID Q39262
description Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1
trembl
ID A0A067KBD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07107 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_060 0.0 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
2 Hb_002774_140 0.1885631584 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_023344_070 0.2550205608 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_000398_050 0.2582833055 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
5 Hb_001103_020 0.2595921799 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
6 Hb_026198_030 0.2646010314 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
7 Hb_026048_020 0.2848828317 - - PREDICTED: uncharacterized protein LOC105645738 [Jatropha curcas]
8 Hb_000665_020 0.2895642589 - - -
9 Hb_002876_160 0.2959844273 - - sucrose transporter 1 [Hevea brasiliensis]
10 Hb_024682_020 0.2987861566 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
11 Hb_000210_090 0.301993292 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
12 Hb_006446_010 0.3049961486 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_003938_160 0.3069340115 - - PREDICTED: transcription factor bHLH155 [Jatropha curcas]
14 Hb_000126_110 0.3085569565 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
15 Hb_032264_090 0.3086193207 - - hypothetical protein JCGZ_02512 [Jatropha curcas]
16 Hb_183610_010 0.3117413667 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
17 Hb_001123_240 0.3137389072 - - JAZ10 [Hevea brasiliensis]
18 Hb_080128_020 0.3149995293 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000384_110 0.315899194 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001486_190 0.318013763 - - hypothetical protein JCGZ_02702 [Jatropha curcas]

Gene co-expression network

sample Hb_000256_060 Hb_000256_060 Hb_002774_140 Hb_002774_140 Hb_000256_060--Hb_002774_140 Hb_023344_070 Hb_023344_070 Hb_000256_060--Hb_023344_070 Hb_000398_050 Hb_000398_050 Hb_000256_060--Hb_000398_050 Hb_001103_020 Hb_001103_020 Hb_000256_060--Hb_001103_020 Hb_026198_030 Hb_026198_030 Hb_000256_060--Hb_026198_030 Hb_026048_020 Hb_026048_020 Hb_000256_060--Hb_026048_020 Hb_007379_020 Hb_007379_020 Hb_002774_140--Hb_007379_020 Hb_002876_160 Hb_002876_160 Hb_002774_140--Hb_002876_160 Hb_092408_010 Hb_092408_010 Hb_002774_140--Hb_092408_010 Hb_000429_180 Hb_000429_180 Hb_002774_140--Hb_000429_180 Hb_000665_020 Hb_000665_020 Hb_002774_140--Hb_000665_020 Hb_023344_070--Hb_026198_030 Hb_000384_110 Hb_000384_110 Hb_023344_070--Hb_000384_110 Hb_023344_070--Hb_002876_160 Hb_018118_030 Hb_018118_030 Hb_023344_070--Hb_018118_030 Hb_001123_240 Hb_001123_240 Hb_023344_070--Hb_001123_240 Hb_023344_070--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_000398_050--Hb_000028_500 Hb_000191_010 Hb_000191_010 Hb_000398_050--Hb_000191_010 Hb_000398_050--Hb_026198_030 Hb_001894_180 Hb_001894_180 Hb_000398_050--Hb_001894_180 Hb_000554_030 Hb_000554_030 Hb_000398_050--Hb_000554_030 Hb_003442_100 Hb_003442_100 Hb_001103_020--Hb_003442_100 Hb_006446_010 Hb_006446_010 Hb_001103_020--Hb_006446_010 Hb_000126_110 Hb_000126_110 Hb_001103_020--Hb_000126_110 Hb_111051_010 Hb_111051_010 Hb_001103_020--Hb_111051_010 Hb_011512_130 Hb_011512_130 Hb_001103_020--Hb_011512_130 Hb_001189_110 Hb_001189_110 Hb_001103_020--Hb_001189_110 Hb_026198_030--Hb_000028_500 Hb_000062_640 Hb_000062_640 Hb_026198_030--Hb_000062_640 Hb_000103_420 Hb_000103_420 Hb_026198_030--Hb_000103_420 Hb_026198_030--Hb_002876_160 Hb_002110_020 Hb_002110_020 Hb_026048_020--Hb_002110_020 Hb_000239_020 Hb_000239_020 Hb_026048_020--Hb_000239_020 Hb_031862_130 Hb_031862_130 Hb_026048_020--Hb_031862_130 Hb_001930_040 Hb_001930_040 Hb_026048_020--Hb_001930_040 Hb_000069_170 Hb_000069_170 Hb_026048_020--Hb_000069_170 Hb_004586_210 Hb_004586_210 Hb_026048_020--Hb_004586_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.630306 2.05485 0.0206633 2.84487 0.295857 0.0458789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.537013 0.234612 2.22466 0.492313 0

CAGE analysis