Hb_000256_080

Information

Type -
Description -
Location Contig256: 138130-140952
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27740g
description POPTRDRAFT_561964; hypothetical protein
nr
ID XP_012076460.1
description PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID A0A067KEU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07109 PE=4 SV=1
Gene Ontology
ID GO:0005886
description desi-like protein at4g17486

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26680: 138182-140928 , PASA_asmbl_26681: 139896-140557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_080 0.0 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
2 Hb_000962_070 0.1279339438 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_001864_080 0.1315836133 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
4 Hb_000291_290 0.1400297459 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000796_150 0.1528896283 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
6 Hb_007044_090 0.1549932718 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
7 Hb_006925_050 0.1563093411 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
8 Hb_005144_120 0.1621138862 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
9 Hb_001767_060 0.1654351411 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
10 Hb_001904_050 0.1667959484 - - alpha-tubulin 1 [Hevea brasiliensis]
11 Hb_000152_440 0.1672411969 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
12 Hb_000935_040 0.1674111744 - - Uncharacterized protein isoform 2 [Theobroma cacao]
13 Hb_007101_110 0.169648854 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
14 Hb_031022_020 0.1711930938 - - -
15 Hb_033152_120 0.1718652182 - - PREDICTED: la-related protein 6C [Jatropha curcas]
16 Hb_003602_060 0.1730036532 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
17 Hb_004003_030 0.1735546467 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000086_210 0.1741108514 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_001847_050 0.1754733204 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
20 Hb_027506_040 0.1765605522 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000256_080 Hb_000256_080 Hb_000962_070 Hb_000962_070 Hb_000256_080--Hb_000962_070 Hb_001864_080 Hb_001864_080 Hb_000256_080--Hb_001864_080 Hb_000291_290 Hb_000291_290 Hb_000256_080--Hb_000291_290 Hb_000796_150 Hb_000796_150 Hb_000256_080--Hb_000796_150 Hb_007044_090 Hb_007044_090 Hb_000256_080--Hb_007044_090 Hb_006925_050 Hb_006925_050 Hb_000256_080--Hb_006925_050 Hb_000096_190 Hb_000096_190 Hb_000962_070--Hb_000096_190 Hb_042083_040 Hb_042083_040 Hb_000962_070--Hb_042083_040 Hb_000962_070--Hb_000796_150 Hb_000638_070 Hb_000638_070 Hb_000962_070--Hb_000638_070 Hb_000181_350 Hb_000181_350 Hb_000962_070--Hb_000181_350 Hb_000057_110 Hb_000057_110 Hb_000962_070--Hb_000057_110 Hb_001864_080--Hb_000291_290 Hb_001864_080--Hb_000962_070 Hb_000069_360 Hb_000069_360 Hb_001864_080--Hb_000069_360 Hb_000390_190 Hb_000390_190 Hb_001864_080--Hb_000390_190 Hb_001864_080--Hb_000096_190 Hb_002182_020 Hb_002182_020 Hb_000291_290--Hb_002182_020 Hb_005144_120 Hb_005144_120 Hb_000291_290--Hb_005144_120 Hb_000291_290--Hb_000390_190 Hb_000291_290--Hb_006925_050 Hb_185830_060 Hb_185830_060 Hb_000796_150--Hb_185830_060 Hb_000072_300 Hb_000072_300 Hb_000796_150--Hb_000072_300 Hb_000359_290 Hb_000359_290 Hb_000796_150--Hb_000359_290 Hb_000665_180 Hb_000665_180 Hb_000796_150--Hb_000665_180 Hb_011671_260 Hb_011671_260 Hb_000796_150--Hb_011671_260 Hb_000140_340 Hb_000140_340 Hb_000796_150--Hb_000140_340 Hb_005511_130 Hb_005511_130 Hb_007044_090--Hb_005511_130 Hb_000984_220 Hb_000984_220 Hb_007044_090--Hb_000984_220 Hb_029253_010 Hb_029253_010 Hb_007044_090--Hb_029253_010 Hb_007044_090--Hb_006925_050 Hb_003964_080 Hb_003964_080 Hb_007044_090--Hb_003964_080 Hb_000282_050 Hb_000282_050 Hb_007044_090--Hb_000282_050 Hb_006925_050--Hb_029253_010 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_004730_020 Hb_004730_020 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_001847_050 Hb_001847_050 Hb_006925_050--Hb_001847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1711 19.2643 61.8599 82.8438 8.12961 5.22472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6252 33.6969 15.1477 4.87326 43.3828

CAGE analysis