Hb_000256_100

Information

Type transcription factor
Description TF Family: ERF
Location Contig256: 160795-162008
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27710g
description POPTRDRAFT_561963; PPLZ02 family protein
nr
ID XP_002308691.1
description PPLZ02 family protein [Populus trichocarpa]
swissprot
ID Q94AW5
description Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1
trembl
ID B9HAT9
description PPLZ02 family protein OS=Populus trichocarpa GN=POPTR_0006s27710g PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf003-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26684: 161348-161879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_100 0.0 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
2 Hb_027445_090 0.1239713711 - - oleosin 18.2 kDa-like [Jatropha curcas]
3 Hb_080225_010 0.1265851515 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
4 Hb_002057_010 0.1708343079 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_005000_040 0.1714609434 - - ACC oxidase ACCO2 [Manihot esculenta]
6 Hb_003057_080 0.1773610632 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
7 Hb_000617_340 0.1815499682 - - respiratory burst oxidase B [Manihot esculenta]
8 Hb_000204_030 0.1839008442 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
9 Hb_001366_250 0.1845368848 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
10 Hb_000140_160 0.1850342351 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
11 Hb_005000_310 0.1885441176 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
12 Hb_000347_550 0.1886845439 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
13 Hb_000614_180 0.1900574667 - - -
14 Hb_008406_010 0.1913801287 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
15 Hb_011283_010 0.1935614256 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
16 Hb_000739_130 0.1949823443 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000045_230 0.1952365552 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
18 Hb_000513_110 0.1959292928 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
19 Hb_000471_080 0.1961729868 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
20 Hb_000347_530 0.1966833439 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]

Gene co-expression network

sample Hb_000256_100 Hb_000256_100 Hb_027445_090 Hb_027445_090 Hb_000256_100--Hb_027445_090 Hb_080225_010 Hb_080225_010 Hb_000256_100--Hb_080225_010 Hb_002057_010 Hb_002057_010 Hb_000256_100--Hb_002057_010 Hb_005000_040 Hb_005000_040 Hb_000256_100--Hb_005000_040 Hb_003057_080 Hb_003057_080 Hb_000256_100--Hb_003057_080 Hb_000617_340 Hb_000617_340 Hb_000256_100--Hb_000617_340 Hb_006478_180 Hb_006478_180 Hb_027445_090--Hb_006478_180 Hb_008406_010 Hb_008406_010 Hb_027445_090--Hb_008406_010 Hb_003538_020 Hb_003538_020 Hb_027445_090--Hb_003538_020 Hb_027445_090--Hb_080225_010 Hb_027445_090--Hb_003057_080 Hb_080225_010--Hb_003057_080 Hb_000347_550 Hb_000347_550 Hb_080225_010--Hb_000347_550 Hb_000614_180 Hb_000614_180 Hb_080225_010--Hb_000614_180 Hb_000086_730 Hb_000086_730 Hb_080225_010--Hb_000086_730 Hb_080225_010--Hb_005000_040 Hb_002057_010--Hb_005000_040 Hb_000748_070 Hb_000748_070 Hb_002057_010--Hb_000748_070 Hb_000140_190 Hb_000140_190 Hb_002057_010--Hb_000140_190 Hb_007044_070 Hb_007044_070 Hb_002057_010--Hb_007044_070 Hb_001268_330 Hb_001268_330 Hb_002057_010--Hb_001268_330 Hb_148435_010 Hb_148435_010 Hb_005000_040--Hb_148435_010 Hb_005000_040--Hb_007044_070 Hb_005000_040--Hb_000748_070 Hb_005000_040--Hb_000086_730 Hb_001936_030 Hb_001936_030 Hb_005000_040--Hb_001936_030 Hb_000045_230 Hb_000045_230 Hb_003057_080--Hb_000045_230 Hb_002311_240 Hb_002311_240 Hb_003057_080--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_003057_080--Hb_000019_220 Hb_003057_080--Hb_000347_550 Hb_011283_010 Hb_011283_010 Hb_003057_080--Hb_011283_010 Hb_003253_020 Hb_003253_020 Hb_000617_340--Hb_003253_020 Hb_000120_710 Hb_000120_710 Hb_000617_340--Hb_000120_710 Hb_001544_040 Hb_001544_040 Hb_000617_340--Hb_001544_040 Hb_000513_110 Hb_000513_110 Hb_000617_340--Hb_000513_110 Hb_000933_200 Hb_000933_200 Hb_000617_340--Hb_000933_200 Hb_006538_050 Hb_006538_050 Hb_000617_340--Hb_006538_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0994931 0.735624 0.56845 1.36363 0.0557875 0.0201679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0866717 0.818094 0.126454 11.8788 0

CAGE analysis