Hb_000256_140

Information

Type -
Description -
Location Contig256: 199604-203688
Sequence    

Annotation

kegg
ID rcu:RCOM_0922440
description hypothetical protein
nr
ID XP_012076467.1
description PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07115 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26689: 199610-199940 , PASA_asmbl_26690: 203263-204012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_140 0.0 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
2 Hb_005288_010 0.0956592739 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000322_150 0.1011353716 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
4 Hb_002411_030 0.1021542494 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
5 Hb_004440_040 0.105626371 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000307_190 0.1075241854 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Populus euphratica]
7 Hb_002636_100 0.1084159475 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
8 Hb_003728_040 0.1140893613 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
9 Hb_010381_030 0.1149908298 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
10 Hb_003055_060 0.115941147 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
11 Hb_000084_030 0.1159523446 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001766_020 0.1176160416 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
13 Hb_000363_400 0.1187226087 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
14 Hb_000347_120 0.120961895 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
15 Hb_009767_100 0.1218496208 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
16 Hb_001104_170 0.1219875259 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
17 Hb_008103_110 0.122715472 - - ATP binding protein, putative [Ricinus communis]
18 Hb_011512_120 0.1238462374 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
19 Hb_006949_020 0.1239758263 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
20 Hb_011930_110 0.1251890143 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000256_140 Hb_000256_140 Hb_005288_010 Hb_005288_010 Hb_000256_140--Hb_005288_010 Hb_000322_150 Hb_000322_150 Hb_000256_140--Hb_000322_150 Hb_002411_030 Hb_002411_030 Hb_000256_140--Hb_002411_030 Hb_004440_040 Hb_004440_040 Hb_000256_140--Hb_004440_040 Hb_000307_190 Hb_000307_190 Hb_000256_140--Hb_000307_190 Hb_002636_100 Hb_002636_100 Hb_000256_140--Hb_002636_100 Hb_009767_100 Hb_009767_100 Hb_005288_010--Hb_009767_100 Hb_001005_190 Hb_001005_190 Hb_005288_010--Hb_001005_190 Hb_005288_010--Hb_000322_150 Hb_000363_400 Hb_000363_400 Hb_005288_010--Hb_000363_400 Hb_003055_060 Hb_003055_060 Hb_005288_010--Hb_003055_060 Hb_002872_040 Hb_002872_040 Hb_005288_010--Hb_002872_040 Hb_076693_020 Hb_076693_020 Hb_000322_150--Hb_076693_020 Hb_000441_070 Hb_000441_070 Hb_000322_150--Hb_000441_070 Hb_000322_150--Hb_002636_100 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_011491_010 Hb_011491_010 Hb_000322_150--Hb_011491_010 Hb_001828_130 Hb_001828_130 Hb_000322_150--Hb_001828_130 Hb_000983_090 Hb_000983_090 Hb_002411_030--Hb_000983_090 Hb_005137_050 Hb_005137_050 Hb_002411_030--Hb_005137_050 Hb_005541_010 Hb_005541_010 Hb_002411_030--Hb_005541_010 Hb_001728_050 Hb_001728_050 Hb_002411_030--Hb_001728_050 Hb_000130_240 Hb_000130_240 Hb_002411_030--Hb_000130_240 Hb_005675_040 Hb_005675_040 Hb_002411_030--Hb_005675_040 Hb_011930_110 Hb_011930_110 Hb_004440_040--Hb_011930_110 Hb_000347_120 Hb_000347_120 Hb_004440_040--Hb_000347_120 Hb_002263_040 Hb_002263_040 Hb_004440_040--Hb_002263_040 Hb_004440_040--Hb_002636_100 Hb_004440_040--Hb_003055_060 Hb_001766_020 Hb_001766_020 Hb_004440_040--Hb_001766_020 Hb_000307_190--Hb_000130_240 Hb_000915_060 Hb_000915_060 Hb_000307_190--Hb_000915_060 Hb_000307_190--Hb_005137_050 Hb_000307_190--Hb_002411_030 Hb_003117_020 Hb_003117_020 Hb_000307_190--Hb_003117_020 Hb_002636_100--Hb_002263_040 Hb_008775_040 Hb_008775_040 Hb_002636_100--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_002636_100--Hb_000264_320 Hb_002798_070 Hb_002798_070 Hb_002636_100--Hb_002798_070 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.67319 14.1035 5.8381 1.85694 5.23328 4.42144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.82047 5.90531 5.17915 5.2709 2.0159

CAGE analysis