Hb_000256_210

Information

Type -
Description -
Location Contig256: 275983-278730
Sequence    

Annotation

kegg
ID pda:103714972
description 40S ribosomal protein S11-like
nr
ID XP_008800685.1
description PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
swissprot
ID Q9M5M1
description 40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1
trembl
ID A0A067F396
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031480mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_210 0.0 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
2 Hb_002159_030 0.1387550359 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
3 Hb_002159_040 0.1469868025 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
4 Hb_000441_160 0.1473758732 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_004920_060 0.1477646513 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
6 Hb_005322_030 0.152157922 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
7 Hb_001196_070 0.1530149817 - - nucleolar protein nop56, putative [Ricinus communis]
8 Hb_000199_080 0.162833489 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000465_120 0.1649045612 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
10 Hb_007668_020 0.1664296152 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
11 Hb_001731_020 0.166857806 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
12 Hb_000244_240 0.1702777089 - - ATP binding protein, putative [Ricinus communis]
13 Hb_003243_020 0.1705249382 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
14 Hb_001278_060 0.1712431743 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_002612_010 0.1714805264 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
16 Hb_007827_020 0.1722100103 - - -
17 Hb_114984_010 0.1733307013 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000976_080 0.173915118 - - hypothetical protein VITISV_034376 [Vitis vinifera]
19 Hb_007348_030 0.1756644301 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
20 Hb_000120_510 0.1759827973 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000256_210 Hb_000256_210 Hb_002159_030 Hb_002159_030 Hb_000256_210--Hb_002159_030 Hb_002159_040 Hb_002159_040 Hb_000256_210--Hb_002159_040 Hb_000441_160 Hb_000441_160 Hb_000256_210--Hb_000441_160 Hb_004920_060 Hb_004920_060 Hb_000256_210--Hb_004920_060 Hb_005322_030 Hb_005322_030 Hb_000256_210--Hb_005322_030 Hb_001196_070 Hb_001196_070 Hb_000256_210--Hb_001196_070 Hb_002159_030--Hb_002159_040 Hb_006882_010 Hb_006882_010 Hb_002159_030--Hb_006882_010 Hb_002159_030--Hb_000441_160 Hb_000329_490 Hb_000329_490 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_004143_070 Hb_004143_070 Hb_002159_030--Hb_004143_070 Hb_002159_040--Hb_000244_240 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_002159_040--Hb_000441_160 Hb_002159_040--Hb_004143_070 Hb_002159_040--Hb_000329_490 Hb_000441_160--Hb_011497_010 Hb_000441_160--Hb_000244_240 Hb_005000_270 Hb_005000_270 Hb_000441_160--Hb_005000_270 Hb_003716_020 Hb_003716_020 Hb_000441_160--Hb_003716_020 Hb_007348_030 Hb_007348_030 Hb_000441_160--Hb_007348_030 Hb_078477_040 Hb_078477_040 Hb_004920_060--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_004920_060--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_004920_060--Hb_001489_070 Hb_008725_130 Hb_008725_130 Hb_004920_060--Hb_008725_130 Hb_008246_030 Hb_008246_030 Hb_004920_060--Hb_008246_030 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030 Hb_000465_120 Hb_000465_120 Hb_005322_030--Hb_000465_120 Hb_005803_010 Hb_005803_010 Hb_005322_030--Hb_005803_010 Hb_005322_030--Hb_001196_070 Hb_000345_530 Hb_000345_530 Hb_005322_030--Hb_000345_530 Hb_000976_080 Hb_000976_080 Hb_005322_030--Hb_000976_080 Hb_000281_100 Hb_000281_100 Hb_005322_030--Hb_000281_100 Hb_005129_050 Hb_005129_050 Hb_001196_070--Hb_005129_050 Hb_001278_060 Hb_001278_060 Hb_001196_070--Hb_001278_060 Hb_001433_190 Hb_001433_190 Hb_001196_070--Hb_001433_190 Hb_125092_020 Hb_125092_020 Hb_001196_070--Hb_125092_020 Hb_000120_510 Hb_000120_510 Hb_001196_070--Hb_000120_510 Hb_001301_210 Hb_001301_210 Hb_001196_070--Hb_001301_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.85926 1.264 2.76419 0.999433 6.08676 9.12642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.362052 0.455455 1.33206 2.00864 1.13659

CAGE analysis