Hb_000256_270

Information

Type -
Description -
Location Contig256: 302897-310141
Sequence    

Annotation

kegg
ID vvi:100249152
description large proline-rich protein bag6-A
nr
ID XP_012076484.1
description PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
swissprot
ID A7X5R6
description Large proline-rich protein BAG6 OS=Ornithorhynchus anatinus GN=BAG6 PE=3 SV=1
trembl
ID A0A067KMN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07126 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin-like superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26710: 302886-303737 , PASA_asmbl_26711: 303834-304603 , PASA_asmbl_26712: 305737-308710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_270 0.0 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
2 Hb_002955_010 0.0725676422 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
3 Hb_001477_010 0.0968212118 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
4 Hb_000565_020 0.1131909269 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
5 Hb_023327_030 0.1144779801 - - osmotin-like protein [Hevea brasiliensis]
6 Hb_113216_010 0.1168236596 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
7 Hb_000372_040 0.1175354372 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_002837_070 0.1183447532 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
9 Hb_001811_060 0.1201418056 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
10 Hb_005000_270 0.1204094955 - - unnamed protein product [Vitis vinifera]
11 Hb_000684_180 0.1214527653 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
12 Hb_000732_020 0.1229942112 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
13 Hb_001252_170 0.123530833 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
14 Hb_007111_040 0.123809542 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
15 Hb_001582_030 0.1245873098 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
16 Hb_000212_280 0.1246505413 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
17 Hb_002290_060 0.1250329733 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
18 Hb_005016_150 0.1253506677 - - -
19 Hb_009615_110 0.1257425538 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
20 Hb_174865_050 0.1264600103 - - PREDICTED: neuroguidin [Jatropha curcas]

Gene co-expression network

sample Hb_000256_270 Hb_000256_270 Hb_002955_010 Hb_002955_010 Hb_000256_270--Hb_002955_010 Hb_001477_010 Hb_001477_010 Hb_000256_270--Hb_001477_010 Hb_000565_020 Hb_000565_020 Hb_000256_270--Hb_000565_020 Hb_023327_030 Hb_023327_030 Hb_000256_270--Hb_023327_030 Hb_113216_010 Hb_113216_010 Hb_000256_270--Hb_113216_010 Hb_000372_040 Hb_000372_040 Hb_000256_270--Hb_000372_040 Hb_000732_020 Hb_000732_020 Hb_002955_010--Hb_000732_020 Hb_009615_110 Hb_009615_110 Hb_002955_010--Hb_009615_110 Hb_002955_010--Hb_000372_040 Hb_000684_180 Hb_000684_180 Hb_002955_010--Hb_000684_180 Hb_002986_050 Hb_002986_050 Hb_002955_010--Hb_002986_050 Hb_118301_010 Hb_118301_010 Hb_001477_010--Hb_118301_010 Hb_001252_170 Hb_001252_170 Hb_001477_010--Hb_001252_170 Hb_002290_060 Hb_002290_060 Hb_001477_010--Hb_002290_060 Hb_001477_010--Hb_002955_010 Hb_012807_080 Hb_012807_080 Hb_001477_010--Hb_012807_080 Hb_077219_010 Hb_077219_010 Hb_000565_020--Hb_077219_010 Hb_000565_020--Hb_113216_010 Hb_012807_120 Hb_012807_120 Hb_000565_020--Hb_012807_120 Hb_002837_070 Hb_002837_070 Hb_000565_020--Hb_002837_070 Hb_098315_100 Hb_098315_100 Hb_000565_020--Hb_098315_100 Hb_001140_080 Hb_001140_080 Hb_000565_020--Hb_001140_080 Hb_002475_050 Hb_002475_050 Hb_023327_030--Hb_002475_050 Hb_005000_270 Hb_005000_270 Hb_023327_030--Hb_005000_270 Hb_079326_010 Hb_079326_010 Hb_023327_030--Hb_079326_010 Hb_002918_070 Hb_002918_070 Hb_023327_030--Hb_002918_070 Hb_003716_020 Hb_003716_020 Hb_023327_030--Hb_003716_020 Hb_000212_280 Hb_000212_280 Hb_113216_010--Hb_000212_280 Hb_000016_180 Hb_000016_180 Hb_113216_010--Hb_000016_180 Hb_113216_010--Hb_002837_070 Hb_000185_090 Hb_000185_090 Hb_113216_010--Hb_000185_090 Hb_025048_040 Hb_025048_040 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_000372_040--Hb_002475_050 Hb_004881_050 Hb_004881_050 Hb_000372_040--Hb_004881_050 Hb_000372_040--Hb_079326_010 Hb_002739_080 Hb_002739_080 Hb_000372_040--Hb_002739_080 Hb_000372_040--Hb_005000_270 Hb_000134_360 Hb_000134_360 Hb_000372_040--Hb_000134_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2873 4.1917 2.57444 4.17607 25.972 37.5271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2378 4.48738 3.83716 4.57204 1.22222

CAGE analysis