Hb_000258_020

Information

Type -
Description -
Location Contig258: 5695-6258
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14320g
description POPTRDRAFT_750033; zinc finger family protein
nr
ID XP_012091056.1
description PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
swissprot
ID Q9SG96
description RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1
trembl
ID A0A067JGG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00660 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl74

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26781: 5261-5488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_020 0.0 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
2 Hb_001916_120 0.1808671937 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
3 Hb_000927_040 0.1984265346 - - -
4 Hb_002234_220 0.2157332555 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
5 Hb_001277_410 0.2165860579 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
6 Hb_001138_010 0.2174163149 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000028_640 0.2189361245 - - Auxin efflux carrier component, putative [Ricinus communis]
8 Hb_007933_020 0.2194994763 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
9 Hb_002124_020 0.2203053208 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
10 Hb_054436_010 0.2205850455 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
11 Hb_001019_120 0.2234366296 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
12 Hb_000252_090 0.2282601268 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
13 Hb_004324_240 0.2284831255 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
14 Hb_030627_040 0.2332083994 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
15 Hb_002217_130 0.2379995264 - - galactinol synthase-1 [Manihot esculenta]
16 Hb_001677_050 0.2384244484 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
17 Hb_120662_010 0.2388877723 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
18 Hb_002159_030 0.2395662545 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
19 Hb_000605_010 0.239579567 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
20 Hb_005460_030 0.2399572634 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_020 Hb_000258_020 Hb_001916_120 Hb_001916_120 Hb_000258_020--Hb_001916_120 Hb_000927_040 Hb_000927_040 Hb_000258_020--Hb_000927_040 Hb_002234_220 Hb_002234_220 Hb_000258_020--Hb_002234_220 Hb_001277_410 Hb_001277_410 Hb_000258_020--Hb_001277_410 Hb_001138_010 Hb_001138_010 Hb_000258_020--Hb_001138_010 Hb_000028_640 Hb_000028_640 Hb_000258_020--Hb_000028_640 Hb_001916_120--Hb_001138_010 Hb_000252_090 Hb_000252_090 Hb_001916_120--Hb_000252_090 Hb_001916_120--Hb_001277_410 Hb_000365_260 Hb_000365_260 Hb_001916_120--Hb_000365_260 Hb_004324_240 Hb_004324_240 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_036702_010 Hb_036702_010 Hb_000927_040--Hb_036702_010 Hb_011953_030 Hb_011953_030 Hb_000927_040--Hb_011953_030 Hb_007933_020 Hb_007933_020 Hb_000927_040--Hb_007933_020 Hb_000927_040--Hb_001916_120 Hb_001677_050 Hb_001677_050 Hb_000927_040--Hb_001677_050 Hb_002124_020 Hb_002124_020 Hb_002234_220--Hb_002124_020 Hb_001741_100 Hb_001741_100 Hb_002234_220--Hb_001741_100 Hb_002217_130 Hb_002217_130 Hb_002234_220--Hb_002217_130 Hb_000605_010 Hb_000605_010 Hb_002234_220--Hb_000605_010 Hb_000200_060 Hb_000200_060 Hb_002234_220--Hb_000200_060 Hb_073212_010 Hb_073212_010 Hb_002234_220--Hb_073212_010 Hb_001277_410--Hb_001138_010 Hb_001277_410--Hb_000252_090 Hb_101020_010 Hb_101020_010 Hb_001277_410--Hb_101020_010 Hb_020549_010 Hb_020549_010 Hb_001277_410--Hb_020549_010 Hb_001138_010--Hb_000252_090 Hb_001138_010--Hb_000605_010 Hb_001138_010--Hb_001677_050 Hb_000156_030 Hb_000156_030 Hb_001138_010--Hb_000156_030 Hb_003540_140 Hb_003540_140 Hb_001138_010--Hb_003540_140 Hb_009913_020 Hb_009913_020 Hb_000028_640--Hb_009913_020 Hb_005460_030 Hb_005460_030 Hb_000028_640--Hb_005460_030 Hb_000028_640--Hb_002217_130 Hb_000161_100 Hb_000161_100 Hb_000028_640--Hb_000161_100 Hb_001019_120 Hb_001019_120 Hb_000028_640--Hb_001019_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.9387 1.09871 0.981251 2.14796 5.95315 6.35632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11087 0 0 0.502186 2.50265

CAGE analysis